PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126134.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 827aa MW: 95973.4 Da PI: 8.6168

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126134.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64	4.2e-20	90	180	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trtgC a+++vk + + k++v+++ eHnH+la XP_027126134.1 90 EFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKREAKPITRTGCGACFRVKYDIeSVKYVVIRFIMEHNHPLA 180 6**************98887.8998999********9988867889999************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence
MGQDGALKTQ LMTWCRKQRI NQMALDVCGR LRSFDLDLNQ EPECDRDTFI EESGGSIGGH 60 EDEEADELVG AIGVDDVMKL TFDTEEEAGE FYNLYAKLSG FGIRKSNAKR DADGISRFRK 120 WVCCCEGYRN EKWFNYEDRK REAKPITRTG CGACFRVKYD IESVKYVVIR FIMEHNHPLA 180 SEASVQHIRS HRKVSDAEYA QAKSLKLVGA RICQIMKHFV IKAGGYSNVG FCIKDLYNRM 240 DEERRKDIFN GDAEGALGFL AAKKDADDMF FYKYHVDNEG RLAMLFWADS KSRADFSVFG 300 DVLVFDTTYK TNKYRKPLVV LAGVNNHLNS TVFGCALLSD ERIETYEWVL STFVEAMKGR 360 KPVAVMTDGD SAMRRAIKNL LPDACHRLCS WHLHRNARSN IRCEEFNNRF YNLMARKCST 420 LEFEDRWARL VNECGVVENE WVKKLYRRRR LWAEAYLRGH FFAGMRSTQR CEKMNAFLNE 480 YLNEKMRLYE FVRSFDLAIA WLRHTESKAV HTSENTKPVL TTILPELEGS AAEVFTRNVF 540 FMVRKHLNRQ GLLISEGWSE DGGNRTYYYS KYGGHEISWR VDYDRSMEKL ICSCMKFESK 600 GIPCAHMFRV MVVEGMNRIP EACISKRWTK GVHCSNNGMK EFVADEQLTQ MARYDTLKSS 660 CNTMCYYASY MDDAFNDLQQ MFDKHSVDLK EKWIDRGYGG DGFAMDSRVR NDRSRRTFGL 720 LDPRVSRCKG DHKHAEAKKK RKCGHCRQAT TNEHAYTKRI RTTQQLMMII WKTVWMTRWK 780 NHLKLVRAAA TQANGEDKHL YHNHSVAVEG TQVANKEVQE KDEALLL

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence

MGQDGALKTQ LMTWCRKQRI NQMALDVCGR LRSFDLDLNQ EPECDRDTFI EESGGSIGGH  60
EDEEADELVG AIGVDDVMKL TFDTEEEAGE FYNLYAKLSG FGIRKSNAKR DADGISRFRK  120
WVCCCEGYRN EKWFNYEDRK REAKPITRTG CGACFRVKYD IESVKYVVIR FIMEHNHPLA  180
SEASVQHIRS HRKVSDAEYA QAKSLKLVGA RICQIMKHFV IKAGGYSNVG FCIKDLYNRM  240
DEERRKDIFN GDAEGALGFL AAKKDADDMF FYKYHVDNEG RLAMLFWADS KSRADFSVFG  300
DVLVFDTTYK TNKYRKPLVV LAGVNNHLNS TVFGCALLSD ERIETYEWVL STFVEAMKGR  360
KPVAVMTDGD SAMRRAIKNL LPDACHRLCS WHLHRNARSN IRCEEFNNRF YNLMARKCST  420
LEFEDRWARL VNECGVVENE WVKKLYRRRR LWAEAYLRGH FFAGMRSTQR CEKMNAFLNE  480
YLNEKMRLYE FVRSFDLAIA WLRHTESKAV HTSENTKPVL TTILPELEGS AAEVFTRNVF  540
FMVRKHLNRQ GLLISEGWSE DGGNRTYYYS KYGGHEISWR VDYDRSMEKL ICSCMKFESK  600
GIPCAHMFRV MVVEGMNRIP EACISKRWTK GVHCSNNGMK EFVADEQLTQ MARYDTLKSS  660
CNTMCYYASY MDDAFNDLQQ MFDKHSVDLK EKWIDRGYGG DGFAMDSRVR NDRSRRTFGL  720
LDPRVSRCKG DHKHAEAKKK RKCGHCRQAT TNEHAYTKRI RTTQQLMMII WKTVWMTRWK  780
NHLKLVRAAA TQANGEDKHL YHNHSVAVEG TQVANKEVQE KDEALLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	446	451	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-97	FAR1 family protein