PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126052.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 493aa MW: 54418.6 Da PI: 8.768

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.6	1e-15	151	210	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + +g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027126052.1 151 SQYRGVTRHRWTGRYEAHLWDnSCRkQGqtRKgRQVYLGGYDQEEKAARAYDLAALKYWG 210 78*****************655565588446***********************98 PP
2	AP2	46.5	9.2e-15	255	304	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ +++g XP_027126052.1 255 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIRFRG 304 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MEIERREHLI TTTATPSSSS LIHPSYPFSY HMSSQDTISN RCDPNSNMNG MSYHVPFDGA 60 TTVSGFKSWL RQTPSPADTN EFSVQESNQN NFEALSLGIN PGAADQPGTS SLLLQVADRN 120 KKRDNSMANR SSAKDSAAPR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCRKQGQT 180 RKGRQVYLGG YDQEEKAARA YDLAALKYWG PTTHINFPLC SYEKELEDMK ATTRQEFVAH 240 LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI 300 RFRGTSAVTN FDISRYDVRR ICSSSTLIAG DLAKAKRSPR NSRPSSVVDD NNSCASSASP 360 QPLAAITNPE ASQHGWNVMV WSSSTDHDQR LQDHETNSND MLQFSASGSR CSSTPQSPKD 420 PVGSTGSPGK NGGECGVEGD YSQLYFSLEG PNSKPKYGDG NNGSEDRDTS SNRLANTGSV 480 HPVPMFSLWN SSI

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MEIERREHLI TTTATPSSSS LIHPSYPFSY HMSSQDTISN RCDPNSNMNG MSYHVPFDGA  60
TTVSGFKSWL RQTPSPADTN EFSVQESNQN NFEALSLGIN PGAADQPGTS SLLLQVADRN  120
KKRDNSMANR SSAKDSAAPR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCRKQGQT  180
RKGRQVYLGG YDQEEKAARA YDLAALKYWG PTTHINFPLC SYEKELEDMK ATTRQEFVAH  240
LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI  300
RFRGTSAVTN FDISRYDVRR ICSSSTLIAG DLAKAKRSPR NSRPSSVVDD NNSCASSASP  360
QPLAAITNPE ASQHGWNVMV WSSSTDHDQR LQDHETNSND MLQFSASGSR CSSTPQSPKD  420
PVGSTGSPGK NGGECGVEGD YSQLYFSLEG PNSKPKYGDG NNGSEDRDTS SNRLANTGSV  480
HPVPMFSLWN SSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-125	AP2 family protein