PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027125812.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB_related | ||||||||
Protein Properties | Length: 334aa MW: 35526.6 Da PI: 9.544 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3.2e-14 | 124 | 168 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky XP_027125812.1 124 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 168 8*******************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence |
MSRCCSQCGS NGHNSRTCGG GSSSASAADG GGGSDSGSGP ISEFMLFGVR VKVDPMRKSV 60 SMNNLSDYEH HPSNASTIQK NSVHVDASAP KAADDVAAGY ASADDALPTH HSSTAARERK 120 RGVPWTEEEH KLFLLGLQKV GKGDWRGISR NFVKTRTPTQ VASHAQKYFL RKSNLNRRRR 180 RSSLFDLTPD SVTGVPMEEG DGHLDETANP ALPATSMPPN ENSSVNGFAG APFPVTVGPI 240 LVPVQVRNPL SSMTVCQADA FGNGSALVVR PVPVPVPNYA TSTVFNLNQR VAAESVSLRL 300 SLSSSDHQRQ SSTRHPAFQR MPSFKNGDSI ITVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 3e-49 | MYB_related family protein |