PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027125810.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 334aa    MW: 35526.6 Da    PI: 9.544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027125810.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.2e-14124168347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
   XP_027125810.1 124 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 168
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MSRCCSQCGS NGHNSRTCGG GSSSASAADG GGGSDSGSGP ISEFMLFGVR VKVDPMRKSV  60
SMNNLSDYEH HPSNASTIQK NSVHVDASAP KAADDVAAGY ASADDALPTH HSSTAARERK  120
RGVPWTEEEH KLFLLGLQKV GKGDWRGISR NFVKTRTPTQ VASHAQKYFL RKSNLNRRRR  180
RSSLFDLTPD SVTGVPMEEG DGHLDETANP ALPATSMPPN ENSSVNGFAG APFPVTVGPI  240
LVPVQVRNPL SSMTVCQADA FGNGSALVVR PVPVPVPNYA TSTVFNLNQR VAAESVSLRL  300
SLSSSDHQRQ SSTRHPAFQR MPSFKNGDSI ITVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.23e-49MYB_related family protein