PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027125661.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 437aa MW: 49350.9 Da PI: 5.1456 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74 | 1.2e-23 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr gilKKA+E+SvLCd+++ +++fs++gk XP_027125661.1 9 KRLESNSNRQVTYSKRRSGILKKAKEISVLCDIDIMLLMFSPNGK 53 689****************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence |
MGRVKLKIKR LESNSNRQVT YSKRRSGILK KAKEISVLCD IDIMLLMFSP NGKPTIFTGA 60 RSNVDEIISK FAQLSSQERA KRKLESLEVL KKTFKKLDHE INIQEYLDGS APSVEESCSQ 120 VRVLRAQLTE LHKRLSWWSN PEKVEDIEHL RQMEGSLRES LTRVRALKEN FVKHQLMPLN 180 CSGQFQSGMQ FAMTMDGNQD GTTLPWIQDN ENQPVILSKD SDFITQRDME YPRDASLPGC 240 SALFTTGKEA EIDNTGLIDN INCPRDITLS SCSGLFGNSK VEETNNTGKM DNMECPRDTS 300 LPSCSGLIDR GKETEFHNAE QVDSITQEGS AMDDLSAISC LRLQLGGEQP YYPYSHLNIP 360 ELNKLEVGRE ANFQENPMTY PMNGNFELPR SIYANLGHPW FPASDDCEIN MMNDNPFTQE 420 LCSHPPLLLP PLASQTK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-89 | M-type_MADS family protein |