PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125466.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 670aa MW: 77135.3 Da PI: 8.0945

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.6	3.2e-21	63	146	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y+ YAke+GF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+l+++ ++++w+v ++ leHnH l XP_027125466.1 63 NYYSCYAKEMGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKEVN-----RLRKETRTGCPAMLRMRIVDSKRWRVVEVTLEHNHLL 146 69**************************************99888.....99*******************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MEEVSVNGVN SEQAIEGQGC ETFLEIDDER ADLDIQNGIP DGRKEFVAPA VGMEFESYED 60 AYNYYSCYAK EMGFRVRVKN SWFKRNSKEK YGAVLCCSSQ GFKRIKEVNR LRKETRTGCP 120 AMLRMRIVDS KRWRVVEVTL EHNHLLGSKI CKAVKKMGTV SKRKLQSSSD SEVRTVKLYR 180 ALVIDAGVNG NSNITVRESR SSSDHSDQLS LKKGDAQAIY NYLCRMQLTN PNFFYLMDLN 240 DNGCIRNFFW VDARSRAASG YFCDVIFLDN TFLSNKYEIP LVAFVGTNHH GQPVLLGCGL 300 LSGETTGCYT WLFKAWLTCT SGHHPHTIIS DRCKILQSAI AEVFPKSLHR FSLSHIMRKV 360 PEKLGGLRNY DAIRKALCKA VYEALKPFDF EAAWGFMIQH FGIADHEWLR ALYEDRSQWA 420 PVYLKDTTFA GMATARPGET LNAFFDKYVH KQTPLKEFLD KYELALQKKH KEEVLADIDS 480 RNSNPELKTR CSFELQLSTV YTREVFKRFQ LEVEEMYSCF STTQLHVEGP VVIFLVKERV 540 MGEANRREIR DFEVLYNRAA AEVRCICSCF NFYGYLCRHA LCVLNFNGVE EIPLKYILPR 600 WKKDYKRLHI PEQGSGNAVV TEGIQWFSQL YRSALQVVEE GVISLEHYKV ALQAFEESLH 660 RVHNVEHKIE

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MEEVSVNGVN SEQAIEGQGC ETFLEIDDER ADLDIQNGIP DGRKEFVAPA VGMEFESYED  60
AYNYYSCYAK EMGFRVRVKN SWFKRNSKEK YGAVLCCSSQ GFKRIKEVNR LRKETRTGCP  120
AMLRMRIVDS KRWRVVEVTL EHNHLLGSKI CKAVKKMGTV SKRKLQSSSD SEVRTVKLYR  180
ALVIDAGVNG NSNITVRESR SSSDHSDQLS LKKGDAQAIY NYLCRMQLTN PNFFYLMDLN  240
DNGCIRNFFW VDARSRAASG YFCDVIFLDN TFLSNKYEIP LVAFVGTNHH GQPVLLGCGL  300
LSGETTGCYT WLFKAWLTCT SGHHPHTIIS DRCKILQSAI AEVFPKSLHR FSLSHIMRKV  360
PEKLGGLRNY DAIRKALCKA VYEALKPFDF EAAWGFMIQH FGIADHEWLR ALYEDRSQWA  420
PVYLKDTTFA GMATARPGET LNAFFDKYVH KQTPLKEFLD KYELALQKKH KEEVLADIDS  480
RNSNPELKTR CSFELQLSTV YTREVFKRFQ LEVEEMYSCF STTQLHVEGP VVIFLVKERV  540
MGEANRREIR DFEVLYNRAA AEVRCICSCF NFYGYLCRHA LCVLNFNGVE EIPLKYILPR  600
WKKDYKRLHI PEQGSGNAVV TEGIQWFSQL YRSALQVVEE GVISLEHYKV ALQAFEESLH  660
RVHNVEHKIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein