PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027125312.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 315aa    MW: 35685.5 Da    PI: 6.3081
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027125312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.5e-192572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llv++++ +G g+W++ a++ g++Rt+k+c++rw++yl
   XP_027125312.1 25 RGPWTVEEDSLLVHYIAAHGEGRWNLLAKRSGLNRTGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding53.45.9e-1778121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_027125312.1  78 RGNLSPEEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MCSLSKSTTT SSCSDDDAAG GELRRGPWTV EEDSLLVHYI AAHGEGRWNL LAKRSGLNRT  60
GKSCRLRWLN YLKPDVKRGN LSPEEQLLIL ELHSKWGNRW SKIAQHLPGR TDNEIKNYWR  120
TRVQKQARHL KIDSNSSEFQ ELVRRVWIPR LLQKVQGNIA YWDSSEHDNL AEIQAAVSSS  180
LAAKQPQQLP YSFPDNHQRN MISSSPSSMS SSESTNISPV PQFSEYIENP FYDMAPNNSY  240
GHSQNEFYNV DSTSYQDMEN LSSAAPVTAM GGSTGPAGDN YCAQNNWLSD DLGCCLWNMD  300
DLWQLKQSQE RCTQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.14e-79MYB family protein