PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125268.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WOX

Protein Properties

Length: 361aa MW: 40973.4 Da PI: 7.0063

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.9	3.1e-22	69	128	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psaee+++++++l +++ ++V++WFqN++a+e++ XP_027125268.1 69 SRWNPTPEQLQTLEELYRRgTRTPSAEEIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 128 7***************99************************************97 PP
2	Wus_type_Homeobox	115.4	2.7e-37	68	130	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++eeiq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ XP_027125268.1 68 SSRWNPTPEQLQTLEELYRRGTRTPSAEEIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 130 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MWMMGYNDGG DSFSGRKLRS IVPRPAAVIN PSCLGRIHGT DLLSFNHHLA GLTEQSKRDF 60 GPQQVVVSSR WNPTPEQLQT LEELYRRGTR TPSAEEIQHI TAQLRRYGKI EGKNVFYWFQ 120 NHKARERQKR RRQLESTSDE QDHNNNDGNV ENTERKESAG ANGTGIEVER TKNWASSTNC 180 STLAEKTVSI QRTAKAAIPE RRAADGWVQF EEAELQQRKS LDERNATWQV MQFSCCSSSS 240 SPPTNNNLIN RTPCAATIPP TSLRNMDPKH IMKTREDLNI FITPYTENFE THLVSASSNI 300 VVREANGHDG QSQTLQLFPL RSNDDGYDQE VAEKQSDESA AEMNSFTSTP YKFFEFLPLK 360 N

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MWMMGYNDGG DSFSGRKLRS IVPRPAAVIN PSCLGRIHGT DLLSFNHHLA GLTEQSKRDF  60
GPQQVVVSSR WNPTPEQLQT LEELYRRGTR TPSAEEIQHI TAQLRRYGKI EGKNVFYWFQ  120
NHKARERQKR RRQLESTSDE QDHNNNDGNV ENTERKESAG ANGTGIEVER TKNWASSTNC  180
STLAEKTVSI QRTAKAAIPE RRAADGWVQF EEAELQQRKS LDERNATWQV MQFSCCSSSS  240
SPPTNNNLIN RTPCAATIPP TSLRNMDPKH IMKTREDLNI FITPYTENFE THLVSASSNI  300
VVREANGHDG QSQTLQLFPL RSNDDGYDQE VAEKQSDESA AEMNSFTSTP YKFFEFLPLK  360
N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	2e-60	WOX family protein