PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125022.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 632aa MW: 68185.4 Da PI: 6.5209

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.7	1.5e-30	277	336	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ XP_027125022.1 277 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCAEDMSILITTYEGTHNHP 336 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence
MDMEAAPRKS VHGGSSVKKE DQQKKAESSG DEDCCTEEVF LKAGNGKGGQ DDKIHQSSPN 60 RQDFTSKIQG FFMPKMEMTS SEFNSNVSSS AQAGQADLLK STKAEMGEVM EENQRLRMYL 120 DRAMKDYRAL QMQFNDMVQQ EPNKSSSTIT THQETEEPEL VSLSLGMSSS DGKKDDHFSS 180 KNHGKEKVDK DGEDDKKVLA LGLDCNFELP KDQENEPSPN PSLEASSGEV KEEEGGEKWP 240 PQKSLKNVRS EEDEVSQQNP AKRARVSVRV RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY 300 YRCTVAPNCP VRKQVQRCAE DMSILITTYE GTHNHPLPVS ATAMASTTSA AASMLMSGST 360 TSTSGLLPPS NFASANLNGL NFFLSDNSKP KPFYLPNSSL SSSPSFPTIT LDLTTSSNAS 420 SNLTKLGSFP PRSYSATRDL NFSSLESNAL PLSWNNGVLS YGPQAQPYNK NQSISSLNFG 480 RQPQETLYQS YSQKNHPILN SSAQQSLPAE TIAAATKAIT SDPSFQSALA AALTSIIGSG 540 AGGTTGAPAS QTSADKSGQN LKLNDQSFPI LSSFPSSTST VNKCAPTFLN SSKPPSSANS 600 QPGSLMFLSP SLSFPTPSNK STSPGDNRDR IS

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence

MDMEAAPRKS VHGGSSVKKE DQQKKAESSG DEDCCTEEVF LKAGNGKGGQ DDKIHQSSPN  60
RQDFTSKIQG FFMPKMEMTS SEFNSNVSSS AQAGQADLLK STKAEMGEVM EENQRLRMYL  120
DRAMKDYRAL QMQFNDMVQQ EPNKSSSTIT THQETEEPEL VSLSLGMSSS DGKKDDHFSS  180
KNHGKEKVDK DGEDDKKVLA LGLDCNFELP KDQENEPSPN PSLEASSGEV KEEEGGEKWP  240
PQKSLKNVRS EEDEVSQQNP AKRARVSVRV RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY  300
YRCTVAPNCP VRKQVQRCAE DMSILITTYE GTHNHPLPVS ATAMASTTSA AASMLMSGST  360
TSTSGLLPPS NFASANLNGL NFFLSDNSKP KPFYLPNSSL SSSPSFPTIT LDLTTSSNAS  420
SNLTKLGSFP PRSYSATRDL NFSSLESNAL PLSWNNGVLS YGPQAQPYNK NQSISSLNFG  480
RQPQETLYQS YSQKNHPILN SSAQQSLPAE TIAAATKAIT SDPSFQSALA AALTSIIGSG  540
AGGTTGAPAS QTSADKSGQN LKLNDQSFPI LSSFPSSTST VNKCAPTFLN SSKPPSSANS  600
QPGSLMFLSP SLSFPTPSNK STSPGDNRDR IS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-60	WRKY family protein