PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124508.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 272aa    MW: 29208 Da    PI: 7.0836
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.81.9e-294107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l++a p++ r+ +++sl+yeA+ r+ +P+yG++g++++++++l+q+
  XP_027124508.1   4 SCNGCRVLRKGCSEKCSIKPCLhwiksPEAQANATVFLAKFYGRAGLLNLINAGPDHLRPGIFRSLLYEACGRIVNPIYGSTGLLWSGNWHLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_027124508.1  99 AVEAVLSGS 107
                     ***998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MRMSCNGCRV LRKGCSEKCS IKPCLHWIKS PEAQANATVF LAKFYGRAGL LNLINAGPDH  60
LRPGIFRSLL YEACGRIVNP IYGSTGLLWS GNWHLCQAAV EAVLSGSPIS QVSADSAACT  120
VCPPLKAGDI RHVSKDENSA GSAARDLHKV KCSKGKFKRA GVKQPKVRVE SPDVDNAARV  180
MWSWSHKEEE EEVVGSPSRD SGVSQHVEPP SRGGECGDAD SASVETVEES LVKPDEPADG  240
SDVELELTLG FEPVLCRQRK VGPQESDGGV NK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-86LBD family protein