PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124413.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 325aa MW: 36568.5 Da PI: 4.7461

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.9	3.3e-38	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dCvlapyfpa+q+k+f+n+h+lFG+s+++k+l++l e++e+am+s+ ye+++r r Pv+G++g++++l++ql+ + +el XP_027124413.1 10 ACAACKYQRRKCSSDCVLAPYFPANQHKSFQNAHRLFGVSKIVKILEQLsTLEQQEEAMKSIKYESDMRERYPVHGCAGIVHHLREQLRLATEEL 104 7**********************************************445669************************************** PP DUF260 95 allkee 100 +++ ++ XP_027124413.1 105 HYVYAQ 110 998766 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MTVKGGTSPA CAACKYQRRK CSSDCVLAPY FPANQHKSFQ NAHRLFGVSK IVKILEQLST 60 LEQQEEAMKS IKYESDMRER YPVHGCAGIV HHLREQLRLA TEELHYVYAQ LAAYREQIPN 120 NQQQLGCSSS DYSSSHQPQL LHSGGMINNS CSTTQSIDAL PFFQHHSAGS MHDYEMPFTM 180 DYFLANENYA DDDEGVRHRD SNDHVAKPLL GSEPVYTNTP PDPYCDLIRN NVNSVVGNQP 240 EVIANSNQVF GIQPEIKVFD PDYEDMPPFN AVVDDRQSYV ETKEACESSS VESSFRDFPQ 300 PVEQESEMES ELRTAAACFS LTSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-38	LBD family protein