PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027124265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 832aa MW: 95828.2 Da PI: 7.1408 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.7 | 1.9e-23 | 26 | 113 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+YA ++GFsvrk++ ++ ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++l+leHnHel XP_027124265.1 26 QFYNKYAFKMGFSVRKDYLNED-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIALFRgTMKYRVHDLVLEHNHEL 113 6*****************9998.8999****************9999.999*******************999****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 832 aa Download sequence |
MDCSKLAEDG TPELGMEFNS EEDAYQFYNK YAFKMGFSVR KDYLNEDKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IALFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMPSQRKVSE AQGFQAEISE DAGLSLKQSH ELLGKEAGGM ENVGYTREDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WTDAGMLIDY QFFGDVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIMIFGAA LMYDETIDSF KWVFGTFVEA MCGKRPSTIL 300 TDQDHAMVAA LSVVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFEEVE 360 QFNRVWEAMV KKHNLENNEW LSELYRIRDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH 420 LKLDHDLVQF FRHFNRVVDE KRHNELIAEY EMRQKLPMVG LRQTPMLVHA SETYSPTVIV 480 AFQNEYGEST AMVILRQQDA AMIVEFAVMR YDEGPERIVV FNRNDLSVRC SCKKYENEGI 540 LCGHALKVFD TLGIKIIPPE YIKRRWTKRA RAGDCFDRRR REVVADPKIM ISTRYRELAP 600 AMIKVATRAA MSEDTSKVAI TVISDLAKRV ELLLSESEEQ PLQNPKNLNM EERDKIEIVN 660 EMGEAVVARG IKKRGGGKKS RVMRSWIDKF DRVKRKSRLS RTTQTTASES EPTSVSVEEP 720 MFMGCRSSTD SVSTHSMSQT VNGPPNAIAP NIDESETVHL LANQGPPTSV PTEWMHPRFS 780 IFSKYNSVRD VLMEERAALL THCDVDAYHG RNNTQGLQLR VDVASPENEI DE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 563 | 581 | KRRWTKRARAGDCFDRRRR |
2 | 577 | 582 | DRRRRE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-109 | FAR1 family protein |