PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124260.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 334aa    MW: 37452.5 Da    PI: 8.1468
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-16431221499
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +   +p +f+++++++   ++t +le ++grsW + +   k ++ +++++GW++Fv++n L+  Df++F ++g s+f  +v +f k
  XP_027124260.1  43 AFRKIPPDFVKKFDKDV--PQTFILEGPQGRSWLILV--VKVGECFYFQEGWQNFVEDNSLENDDFLTFCYSGCSTF--YVEIFGK 122
                     4568*********8774..569***************..8888889************************9985666..9999875 PP
2B344.33.1e-14196276591
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     lt+ +++k   + +p++f  e+ +++ ++ +  +   +gr+W+v++    +++ ++l++GW+ F+k+n LkegD + F+l++++ ++
  XP_027124260.1 196 LTKTYANK--YVKFPRDF--ENVENHWRNGKSAFLRVQGREWKVNI--AESGKYFFLSTGWSTFAKENSLKEGDECNFELIDNNATQ 276
                     43333333..36777777..33333444456677888*********..999999**************************9876554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MAGIPALSSL NAPLASLGNS DCEGMSAQFN IIIPVSRVND KAAFRKIPPD FVKKFDKDVP  60
QTFILEGPQG RSWLILVVKV GECFYFQEGW QNFVEDNSLE NDDFLTFCYS GCSTFYVEIF  120
GKHGCRKKVA CTTWKDNAMH RNDNAVEQLH GKSNNSPKQM GRSLRSGTRG SCSEISQAGK  180
VQDNSRHNSD LFKVQLTKTY ANKYVKFPRD FENVENHWRN GKSAFLRVQG REWKVNIAES  240
GKYFFLSTGW STFAKENSLK EGDECNFELI DNNATQLLCP FLGLIAMYWP FAFCILSSPE  300
GNVASLVKSY KSGDCVVVIR IGKDGVSYGI CGYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-15B3 family protein