PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124119.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 584aa    MW: 65869.8 Da    PI: 6.3546
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.25e-922145821374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkf 93 
                     lv+ Ll +Ae+v ++++ la+ l++r   +as +g++ qR++++f+eAL++r+  ++ ++      +  + +++ + +   ++ + +++ P+ ++
  XP_027124119.1 214 LVQFLLIAAECVGHKKFDLASGLITRCLCIASDSGNAAQRIVFHFAEALQHRIDMQTGKITPERiiERFAYARNLELDFNLSFLACHQAIPFTQV 308
                     57899*************************************************97777664431255555555577777888889********* PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++++a qaI + v++++++H +D+ i  G+QW  L+qaL +R ++pp lRiT+vg     +k+++eetg+rL +fA++l+++++fnv++++++e+
  XP_027124119.1 309 TQFAAMQAIIDNVKSATKIHLVDLHIRSGVQWTVLMQALVER-DDPPALRITAVGT---MNKQRMEETGKRLISFAQSLNLSLSFNVVMVSDMEE 399
                     ******************************************.667**********...67********************************** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ ++L+  p+Ea+aV + l l ++ +++ sl++    v+k++++++P vvvv+e ea+hns+ F  rf+e+l +ysa+fd+le  + r++e+r+
  XP_027124119.1 400 LKEDMLSKAPDEAVAVYSPLILRTMISKPESLRN----VIKVIRRMKPAVVVVTEVEANHNSPLFISRFTESLFFYSAFFDCLEDCMERNNEHRK 490
                     **************************99999999....********************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++E  +lg+ i+n+v  eg++r  r+     Wre +++ G+ +v+ls++  +qa+++l++++     ++ +  + +v+gWk+ p+ s++aW+
  XP_027124119.1 491 TIEGIYLGEGIRNMVGSEGDKRCTRNVMIDVWREFFTRYGMVEVELSHSSLQQANMILKRFHkASSCNLINAGKGIVIGWKGTPIHSLTAWK 582
                     **************************************************************88889999*********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    
MEDYEADEQE ANGGKKQRQP PQPPDTDWFD VEDNSLYGLY QQQNNPTPSK VAFLEGGQQA  60
TSTPPQFNWV QNDFQHLVST PALHSFQPIY DQATAKNNEQ PQQQRLPETG GKWQQLKGKT  120
HSFTLASLEL LSNYGKGFKN AAREDQNWSN DSPTNIDQDS SQGRRLSLGE IIRAAGERYI  180
QFSTKNVDGF SGLIHPYAST ITDISVAETA DVELVQFLLI AAECVGHKKF DLASGLITRC  240
LCIASDSGNA AQRIVFHFAE ALQHRIDMQT GKITPERIIE RFAYARNLEL DFNLSFLACH  300
QAIPFTQVTQ FAAMQAIIDN VKSATKIHLV DLHIRSGVQW TVLMQALVER DDPPALRITA  360
VGTMNKQRME ETGKRLISFA QSLNLSLSFN VVMVSDMEEL KEDMLSKAPD EAVAVYSPLI  420
LRTMISKPES LRNVIKVIRR MKPAVVVVTE VEANHNSPLF ISRFTESLFF YSAFFDCLED  480
CMERNNEHRK TIEGIYLGEG IRNMVGSEGD KRCTRNVMID VWREFFTRYG MVEVELSHSS  540
LQQANMILKR FHKASSCNLI NAGKGIVIGW KGTPIHSLTA WKFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-60GRAS family protein