PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124092.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 418aa    MW: 47200.9 Da    PI: 5.1393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS148.66e-4616741484343
            GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                      ++  P+   ++++  q Ileav  +++vH  Df+i +G QW  +++aLa     +   l+iT vg      + ++e++g+rL++ A+++++pf+
  XP_027124092.1 167 CQQEVPFCLETQFISSQSILEAVTAAKKVHLMDFEIDNGSQWTLIMEALAVHHeCPVELLKITDVGT----CEATMEKMGKRLSSSAQTINLPFS 257
                     466779999999**************************************877255569********....9*********************** PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                     f++ v+++l+dl+ e ++ + +Ea+a+ l ++l +ll+ + +le     ++ ++ks++P  +v+ e e+   +++Flerf e+l + s   ds++
  XP_027124092.1 258 FKI-VVSDLKDLKEEFFNSEADEAVAIDLPYRLWSLLAWPNHLEA----LMAVIKSIKPCFLVLKEVEVYAKAPTFLERFNEKLLFISGPIDSTN 347
                     **9.7999****************************966666666....*********************************************8 PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                     + +      r+ vE++     i+nv+++e  er+ r+e+ + Wr  ++++GF +  l+++   qa+l l++
  XP_027124092.1 348 SCM----LYRKLVEEVHWWGMIRNVLTAESIERTLRQERIGFWRFLFKKFGFVESDLNQTSILQANLSLKR 414
                     885....89*********************************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MPISFSNISR TSEAMWYKVE RLRDPQKLLE ESPDTPNNSC CSQALLTDKI MKLAKAQLVL  60
LNSKKADVLS SGKGCFRGQC GVSSKVAQDL ELALLVQAAA EKVEDEQLVC ARKLLTICDV  120
LASKTALNEK IDQALGIISS DKLKGQEWLP MAEELDKNFL EPVIMSCQQE VPFCLETQFI  180
SSQSILEAVT AAKKVHLMDF EIDNGSQWTL IMEALAVHHE CPVELLKITD VGTCEATMEK  240
MGKRLSSSAQ TINLPFSFKI VVSDLKDLKE EFFNSEADEA VAIDLPYRLW SLLAWPNHLE  300
ALMAVIKSIK PCFLVLKEVE VYAKAPTFLE RFNEKLLFIS GPIDSTNSCM LYRKLVEEVH  360
WWGMIRNVLT AESIERTLRQ ERIGFWRFLF KKFGFVESDL NQTSILQANL SLKRSDQC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.11e-33GRAS family protein