PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123815.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

E2F/DP

Protein Properties

Length: 404aa MW: 44693.5 Da PI: 9.0984

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.5	4.6e-23	37	102	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ ++ +++ l+++a +L v +rRRiYDi+NVLe+++++++k+kn+++wkg XP_027123815.1 37 RKQKSLGLLCSNFLRLYDREGVETIGLDDAAARL---GV--ERRRIYDIVNVLESVGVLARKAKNRYTWKG 102 79***************999********.....****************************98 PP
2	E2F_TDP	72.6	4.3e-23	173	253	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL lltq+f+kl+ + + ++++l+++ak L+++ ++ k+RR+YDi+NVL +++ iek ++k+++rw g XP_027123815.1 173 RKEKSLALLTQNFVKLFLCMDMDMISLDDAAKILLKNgkdpaMTRSKVRRLYDIANVLASMKFIEKthhpeTRKPAFRWLG 253 79*******************************9998899*****************99999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MGMELLPSAN QAYEAAAAAA AGGSGGGGGG SQHIYCRKQK SLGLLCSNFL RLYDREGVET 60 IGLDDAAARL GVERRRIYDI VNVLESVGVL ARKAKNRYTW KGFGAIPSAL QLLKEQGMVT 120 NENANDGTSS VKTSDDEEDD TYSNLSNYSS QNHNFNPISA PKLPQSSKYA DNRKEKSLAL 180 LTQNFVKLFL CMDMDMISLD DAAKILLKNG KDPAMTRSKV RRLYDIANVL ASMKFIEKTH 240 HPETRKPAFR WLGMKGISES GADPSAIDGS KKRAFGMDLT NMTVKRSKVE PVGDGGLQQG 300 MKVQLKAQVK REALEDEVLR PKLQTDSRAS TRSYRFGPFA PVNAPQVAAS EDNKETQSHD 360 WESLAATYRP QYHNQALRDL FAHYVEAWKS WYTEVAEIPI QLIS

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MGMELLPSAN QAYEAAAAAA AGGSGGGGGG SQHIYCRKQK SLGLLCSNFL RLYDREGVET  60
IGLDDAAARL GVERRRIYDI VNVLESVGVL ARKAKNRYTW KGFGAIPSAL QLLKEQGMVT  120
NENANDGTSS VKTSDDEEDD TYSNLSNYSS QNHNFNPISA PKLPQSSKYA DNRKEKSLAL  180
LTQNFVKLFL CMDMDMISLD DAAKILLKNG KDPAMTRSKV RRLYDIANVL ASMKFIEKTH  240
HPETRKPAFR WLGMKGISES GADPSAIDGS KKRAFGMDLT NMTVKRSKVE PVGDGGLQQG  300
MKVQLKAQVK REALEDEVLR PKLQTDSRAS TRSYRFGPFA PVNAPQVAAS EDNKETQSHD  360
WESLAATYRP QYHNQALRDL FAHYVEAWKS WYTEVAEIPI QLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-113	E2F/DP family protein