PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027123758.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 166aa    MW: 18901.8 Da    PI: 10.2527
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027123758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF572.4e-181863449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    e + n +vtfskRrng++ KA+EL++L++aeva+++fs+  + y +
  XP_027123758.1 18 EKNNNLHVTFSKRRNGLFMKANELCTLTGAEVALLVFSPGKRAYSF 63
                    567789********************************99888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MAKKLTRGHQ KVPIVEMEKN NNLHVTFSKR RNGLFMKANE LCTLTGAEVA LLVFSPGKRA  60
YSFGHSSFES VIDKFVGNKP SPSVHGGTNH HGDNIDELNN KIIDLKTQLK ANKKREEVLG  120
QMIKEGQHKN WWQAPIGEMN LEQLLMMKKA LEELQKKVQD ELTRQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-40M-type_MADS family protein