PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027123667.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 409aa MW: 46232 Da PI: 5.0298 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.1 | 1.1e-23 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr gilKKA+E+SvLCd+++ +++fs++gk XP_027123667.1 9 KRLESNSNRQVTYSKRRSGILKKAKEISVLCDIDIMLLMFSPNGK 53 689****************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence |
MGRVKLKIKR LESNSNRQVT YSKRRSGILK KAKEISVLCD IDIMLLMFSP NGKPTIFTGA 60 RSNVDEIISK FAQLSSQERA KRKLESLEVL KKTFKKLDHE INIQEYLDGS APSVEESCSQ 120 VRVLRAQLTE LHNRLSWWSN PEKVEDIEHL RQMEGSLRES LTRVRALKFQ SGMQFPMTMD 180 GNQDGTTLPW IQDNENQPVI LSKDSDFITQ RDMEYPRDAS LPGCSALFTT GKEAEIDNTG 240 LIDNINCPRD ITLSSCSGLF SNSKVEGTNN TGKMDNMECP RDTSLPSCSG LIDRGKETEF 300 HNAEQVDSIT QEGSAMDDLS AISCLRLQLG GEQPYYPYSH LNIPELNKLE VGREANFQEN 360 PMTYQMNGNF ELPRSIYANL GHPWFPASDD CEINMMNDNP FTQPSSQHP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 8e-82 | M-type_MADS family protein |