PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123665.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

M-type_MADS

Protein Properties

Length: 425aa MW: 48119.2 Da PI: 5.1289

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123665.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74	1.2e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr gilKKA+E+SvLCd+++ +++fs++gk XP_027123665.1 9 KRLESNSNRQVTYSKRRSGILKKAKEISVLCDIDIMLLMFSPNGK 53 689****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MGRVKLKIKR LESNSNRQVT YSKRRSGILK KAKEISVLCD IDIMLLMFSP NGKPTIFTGA 60 RSNVDEIISK FAQLSSQERA KRKLESLEVL KKTFKKLDHE INIQEYLDGS APSVEESCSQ 120 VRVLRAQLTE LHNRLSWWSN PEKVEDIEHL RQMEGSLRES LTRVRALKEN FVKHQLMPLN 180 YSGQFQSGMQ FPMTMDGNQD GTTLPWIQDN ENQPVILSKD SDFITQRDME YPRDASLPGC 240 SALFTTGKEA EIDNTGLIDN INCPRDITLS SCSGLFSNSK VEGTNNTGKM DNMECPRDTS 300 LPSCSGLIDR GKETEFHNAE QVDSITQEGS AMDDLSAISC LRLQLGGEQP YYPYSHLNIP 360 ELNKLEVGRE ANFQENPMTY QMNGNFELPR SIYANLGHPW FPASDDCEIN MMNDNPFTQP 420 SSQHP

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MGRVKLKIKR LESNSNRQVT YSKRRSGILK KAKEISVLCD IDIMLLMFSP NGKPTIFTGA  60
RSNVDEIISK FAQLSSQERA KRKLESLEVL KKTFKKLDHE INIQEYLDGS APSVEESCSQ  120
VRVLRAQLTE LHNRLSWWSN PEKVEDIEHL RQMEGSLRES LTRVRALKEN FVKHQLMPLN  180
YSGQFQSGMQ FPMTMDGNQD GTTLPWIQDN ENQPVILSKD SDFITQRDME YPRDASLPGC  240
SALFTTGKEA EIDNTGLIDN INCPRDITLS SCSGLFSNSK VEGTNNTGKM DNMECPRDTS  300
LPSCSGLIDR GKETEFHNAE QVDSITQEGS AMDDLSAISC LRLQLGGEQP YYPYSHLNIP  360
ELNKLEVGRE ANFQENPMTY QMNGNFELPR SIYANLGHPW FPASDDCEIN MMNDNPFTQP  420
SSQHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	4e-89	M-type_MADS family protein