PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123549.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 464aa MW: 51985 Da PI: 4.0567

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.3	9.7e-10	229	276	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +W++eE+e++ ++v ++ W+ a +++ Rt k+++s+++++ XP_027123549.1 229 KWSEEEEEIFTEVVFSHPASlgrnFWNHLAIEFP-SRTKKEIVSYYFNV 276 8**************9999999******.*********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MWVGEDGAAC DKKKGERDES LVDSNLAEFQ SYVEKEIDRS LACSISNSSW ATSTTCEEDV 60 RSEAPCILLS PDHYNLDFPA RTIFHTGDIY SSLLEYPPRK LVPIGSGFQA EIPEWCGCDD 120 EKLSSSSGDA FEVFNRSSQS LMSDIGNHLD HERQFSGSCL VPMPRSDMSE DTVEKLGDGR 180 IDCSCDDVGS VRCVRQHITE AREKLRKTLG QEAFVKLGFL EVGEVVAEKW SEEEEEIFTE 240 VVFSHPASLG RNFWNHLAIE FPSRTKKEIV SYYFNVFMLR RRAEQNRIDV LSIDSDNDEW 300 EGTNVSADEV IEKINGYDDS LVESPAEEDD HNEIFEDNLC EYKDDINAEE ASEDNIRLNL 360 DGSKCVSKES DMCPIDMPDN CSSDQAHQPL DQVLSDISGN QNTKHITSDL SSMSSSTGNE 420 LFLEPCSSKE WDVGCLTCPK DEDFLPTSSV IEEVFGAGAW NSRD

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MWVGEDGAAC DKKKGERDES LVDSNLAEFQ SYVEKEIDRS LACSISNSSW ATSTTCEEDV  60
RSEAPCILLS PDHYNLDFPA RTIFHTGDIY SSLLEYPPRK LVPIGSGFQA EIPEWCGCDD  120
EKLSSSSGDA FEVFNRSSQS LMSDIGNHLD HERQFSGSCL VPMPRSDMSE DTVEKLGDGR  180
IDCSCDDVGS VRCVRQHITE AREKLRKTLG QEAFVKLGFL EVGEVVAEKW SEEEEEIFTE  240
VVFSHPASLG RNFWNHLAIE FPSRTKKEIV SYYFNVFMLR RRAEQNRIDV LSIDSDNDEW  300
EGTNVSADEV IEKINGYDDS LVESPAEEDD HNEIFEDNLC EYKDDINAEE ASEDNIRLNL  360
DGSKCVSKES DMCPIDMPDN CSSDQAHQPL DQVLSDISGN QNTKHITSDL SSMSSSTGNE  420
LFLEPCSSKE WDVGCLTCPK DEDFLPTSSV IEEVFGAGAW NSRD