PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123439.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 305aa MW: 34408 Da PI: 5.8579

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	9e-19	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd llv++++ +G g+W++ a++ g++Rt+k+c++rw++yl XP_027123439.1 25 RGPWTVEEDSLLVHYIAAHGEGRWNLLAKRSGLNRTGKSCRLRWLNYL 72 89********************************************97 PP
2	Myb_DNA-binding	53.5	5.6e-17	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_027123439.1 78 RGNLSPEEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MCSLSKSTTT SSCSDDDAAG GELRRGPWTV EEDSLLVHYI AAHGEGRWNL LAKRSGLNRT 60 GKSCRLRWLN YLKPDVKRGN LSPEEQLLIL ELHSKWGNRW SKIAQHLPGR TDNEIKNYWR 120 TRVQKQARHL KIDSNSSEFQ ELVRRVWIPR LLQKVQGNIA YWDSSEHDNL AEIQAAVSNS 180 MAAKQPQQVP YSFPDSHQRN MISSSPSSMS SSESTNISPV PQFSEYIENP FYDMAPNNSY 240 GHSQNECYNV DSTSYQDMEN LSSAAPVTAM GGSTGPAGDN YCAQNNWLSD DDLGYCLWNM 300 DDLCN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25340.1	8e-78	MYB family protein