PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123429.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 971aa MW: 109227 Da PI: 8.0439

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.8e-10	293	336	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT Ed+ l+++v+q G +W Ia mg++Rt+ qc r+q XP_027123429.1 293 SWTSTEDKNLLHVVQQKGLSNWIDIAVSMGTNRTPFQCLARYQR 336 7*****************************************96 PP
2	Myb_DNA-binding	40.8	5.1e-13	345	388	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd +l av+ +G +W +a+ m gR + qc +rw k XP_027123429.1 345 REWTEEEDNQLRAAVEAFGESNWQVVASAME-GRIGTQCSNRWMK 388 68***************************.*********98 PP
3	Myb_DNA-binding	59.1	9.6e-19	398	441	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT+eEd++l+ av ++G++tWk+Iar ++ gRt qc++rw + XP_027123429.1 398 GKWTPEEDKRLKVAVMLFGPKTWKKIARFVP-GRTQVQCRERWVN 441 79***************************.*********87 PP
4	Myb_DNA-binding	48.6	1.8e-15	449	494	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r+ WT+eEd +l+ a++++G W+++a++++ Rt+ qc+ rw +l XP_027123429.1 449 RNDWTQEEDSKLKAAIEEHGYC-WSKVAACVP-PRTDSQCRRRWKVLL 494 789***************99.*****.9********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence
NSGGLGESTE VVSHKPENSN LQEESPSYLD KINNATKDID ACSKVNAGTQ PSDFSEWHDS 60 DSVNAAILPV KGSSFPKAAE AFVDAIKKNR SCQKLIRSKL LHIETRIEEL KKLKERVKIL 120 KDFQATCRKR VGQALSQKKD ARVQLISVPK LSANVQLSQK KSSPMQYGPA ENSQVANYRE 180 ALEKFPVSVI RNKWSKEERE KLSNGVKQQF QKMLLQRSVD LLSDGDGSFD DSDNLDSIVA 240 SIRDLDITPD KMRQFLPKVN WDELASMYLP GRSGAECQAR WLNCEDPLIN QNSWTSTEDK 300 NLLHVVQQKG LSNWIDIAVS MGTNRTPFQC LARYQRSLNA SIIKREWTEE EDNQLRAAVE 360 AFGESNWQVV ASAMEGRIGT QCSNRWMKSL HPARQRVGKW TPEEDKRLKV AVMLFGPKTW 420 KKIARFVPGR TQVQCRERWV NCVDPSLNRN DWTQEEDSKL KAAIEEHGYC WSKVAACVPP 480 RTDSQCRRRW KVLLPHEVPW LQAAKKMQRA ALISNFVDRE SERPGLLPSD FVPLPEITCT 540 SESERINLSG HQNWGLSNLG SEEVLASGTE VERFTSDSIS RRKRQRRKSR RTNSIASSEE 600 HLSYCPDTMH SSETMHSNDL ETLGGFNHCQ NRSSQKSKGM ASGYKCTSKK RARRTHPKRD 660 GCSDSVDRIS SSNNVNSLIM TGGEETRELV RDDGSGTQCK QDFDQHPSYS RCNKSLEENG 720 GCNDTEGHQL LFDNPNLLLI AKGEEVVEVD RSERAATLGQ KRDDESASRC KQYFVQHPSH 780 SSRNELREEN GGCNDTEGHQ LSFDNPNLLL IENGEEAVEV NRSDGVATLG RKASKLHPRR 840 SGHNESPDGI PGISFPNTAE FDVVHDTVVN KQRSETKSTP EKSESTNAVD HHSSSLLNST 900 VKKDLGTSGV IGSKRGKRSR NRDETSVVEE TENDDMTLAE FCNKRLAAEN TGDDDMTLAM 960 FCNKIKKRRR G

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence

NSGGLGESTE VVSHKPENSN LQEESPSYLD KINNATKDID ACSKVNAGTQ PSDFSEWHDS  60
DSVNAAILPV KGSSFPKAAE AFVDAIKKNR SCQKLIRSKL LHIETRIEEL KKLKERVKIL  120
KDFQATCRKR VGQALSQKKD ARVQLISVPK LSANVQLSQK KSSPMQYGPA ENSQVANYRE  180
ALEKFPVSVI RNKWSKEERE KLSNGVKQQF QKMLLQRSVD LLSDGDGSFD DSDNLDSIVA  240
SIRDLDITPD KMRQFLPKVN WDELASMYLP GRSGAECQAR WLNCEDPLIN QNSWTSTEDK  300
NLLHVVQQKG LSNWIDIAVS MGTNRTPFQC LARYQRSLNA SIIKREWTEE EDNQLRAAVE  360
AFGESNWQVV ASAMEGRIGT QCSNRWMKSL HPARQRVGKW TPEEDKRLKV AVMLFGPKTW  420
KKIARFVPGR TQVQCRERWV NCVDPSLNRN DWTQEEDSKL KAAIEEHGYC WSKVAACVPP  480
RTDSQCRRRW KVLLPHEVPW LQAAKKMQRA ALISNFVDRE SERPGLLPSD FVPLPEITCT  540
SESERINLSG HQNWGLSNLG SEEVLASGTE VERFTSDSIS RRKRQRRKSR RTNSIASSEE  600
HLSYCPDTMH SSETMHSNDL ETLGGFNHCQ NRSSQKSKGM ASGYKCTSKK RARRTHPKRD  660
GCSDSVDRIS SSNNVNSLIM TGGEETRELV RDDGSGTQCK QDFDQHPSYS RCNKSLEENG  720
GCNDTEGHQL LFDNPNLLLI AKGEEVVEVD RSERAATLGQ KRDDESASRC KQYFVQHPSH  780
SSRNELREEN GGCNDTEGHQ LSFDNPNLLL IENGEEAVEV NRSDGVATLG RKASKLHPRR  840
SGHNESPDGI PGISFPNTAE FDVVHDTVVN KQRSETKSTP EKSESTNAVD HHSSSLLNST  900
VKKDLGTSGV IGSKRGKRSR NRDETSVVEE TENDDMTLAE FCNKRLAAEN TGDDDMTLAM  960
FCNKIKKRRR G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	581	591	RRKRQRRKSRR
2	583	591	KRQRRKSRR
3	585	591	QRRKSRR
4	917	922	KRSRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein