PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027123400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 258aa MW: 29472.5 Da PI: 8.7471 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.8 | 6.4e-22 | 63 | 146 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y+ YAke+GF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+l+++ ++++w+v ++ leHnH l XP_027123400.1 63 NYYSCYAKEMGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKEVN-----RLRKETRTGCPAMLRMRIVDSKRWRVVEVTLEHNHLL 146 69****************************************99888.....99*********************************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MEEVSVNGVN SEQAIEGQGC ETFLEIDDER ADLDIQNDIP DGRKEFVEPA VGMEFESYED 60 AYNYYSCYAK EMGFRVRVKN SWFKRNSKEK YGAVLCCSSQ GFKRIKEVNR LRKETRTGCP 120 AMLRMRIVDS KRWRVVEVTL EHNHLLGSKI CKAVKKMGTG SKRKLQSSSD SEVRTVKLYR 180 ALVIDAGVNG NSNITVRESR SSSDHSDQLS LKKGDAQAIY NYLCRMQLTN PNFYISVVHT 240 NKNTKCYIHL PTSCIYVN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 6e-88 | FAR1 family protein |