PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123335.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 639aa MW: 73507.3 Da PI: 8.3265

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123335.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.8	3.2e-22	21	108	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+Y+ vGFsvrk++ +k +ng it +++ C keg++ + k + +k +rtr+et+tgC+ k+ + +++ + k++v++l+ eHnH+l XP_027123335.1 21 NFYNKYGLVVGFSVRKDYLNKD-KNGVITLKRYICCKEGFKPRYKGD-VKLKRTRTETKTGCETKMGIILNReTMKYQVQDLVIEHNHTL 108 6***************9998.8899**********999988.9***************999989************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MEEALCSKIG MEFQSEDEAY NFYNKYGLVV GFSVRKDYLN KDKNGVITLK RYICCKEGFK 60 PRYKGDVKLK RTRTETKTGC ETKMGIILNR ETMKYQVQDL VIEHNHTLHI AECTHMMRSQ 120 RKVSISQGPQ SEIANDAGIS LKQSHELMGK EASGLGNIGY IRDDLKRYLQ TKRERGLKYG 180 EAGAMLRYFE EQKLENPSLF HAEQLDCEEQ ITNIFWADAS MLMDYTYFRD VVTFDTTYKT 240 NKEYRPLGVF VGFNQFRQLD AAMAATISAV MPSTYHGLCT FHIRVNFMKH LGNYYKDGSN 300 LPYKFAECMH EIEDENEFIM TWDAMLKEHK LETNEWLCGI YACRKKWAKC FMKGAWTAVV 360 DEKRYNELRA EYHSRQKLPM MGLQQTPVLI QAASIYSPCM FVAFQNEYDE STTMVILDQK 420 HTTMYVECSV SHYDGGRERR VILNPITKDI TCSCNLFEQE GILCSHALKV YDMVGTKFIP 480 DHYVTKKWTK KARSRGNVDC KGREISSDPS LSISRRYRLL APKIVRLAIR AAMSEAATKL 540 VSSSFSESNF GSSPVIYSDI QSCRMSGEAG ITPQILSAHN IRIQDRNNLP LLLPNDPVSK 600 TKYTGFTEFL MTPIVDSVER SKSRTFMQLS DEKVQLPTI

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MEEALCSKIG MEFQSEDEAY NFYNKYGLVV GFSVRKDYLN KDKNGVITLK RYICCKEGFK  60
PRYKGDVKLK RTRTETKTGC ETKMGIILNR ETMKYQVQDL VIEHNHTLHI AECTHMMRSQ  120
RKVSISQGPQ SEIANDAGIS LKQSHELMGK EASGLGNIGY IRDDLKRYLQ TKRERGLKYG  180
EAGAMLRYFE EQKLENPSLF HAEQLDCEEQ ITNIFWADAS MLMDYTYFRD VVTFDTTYKT  240
NKEYRPLGVF VGFNQFRQLD AAMAATISAV MPSTYHGLCT FHIRVNFMKH LGNYYKDGSN  300
LPYKFAECMH EIEDENEFIM TWDAMLKEHK LETNEWLCGI YACRKKWAKC FMKGAWTAVV  360
DEKRYNELRA EYHSRQKLPM MGLQQTPVLI QAASIYSPCM FVAFQNEYDE STTMVILDQK  420
HTTMYVECSV SHYDGGRERR VILNPITKDI TCSCNLFEQE GILCSHALKV YDMVGTKFIP  480
DHYVTKKWTK KARSRGNVDC KGREISSDPS LSISRRYRLL APKIVRLAIR AAMSEAATKL  540
VSSSFSESNF GSSPVIYSDI QSCRMSGEAG ITPQILSAHN IRIQDRNNLP LLLPNDPVSK  600
TKYTGFTEFL MTPIVDSVER SKSRTFMQLS DEKVQLPTI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-66	FAR1 family protein