PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123224.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 351aa MW: 39982.6 Da PI: 8.5785

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.3	1e-23	40	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWtkqe+l L+e+++ e++ rrg+ + +p+W++vs+++r +g++r+p+qC+++w+nl ++kki+++e++ ++e +s +++ ++l+ XP_027123224.1 40 RWTKQETLILVEGKNIAESQGRRGRrssslfvtgQHEPKWDSVSSYCRLHGVNRGPVQCRKRWSNLVSDFKKIRTWESQVKEEGESFWVMRNDLR 134 8************9999999986677888888*******************************************99999999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MAPGPNDRLE KATSSASVLD EEHQAVERTN SENKSTRHPR WTKQETLILV EGKNIAESQG 60 RRGRRSSSLF VTGQHEPKWD SVSSYCRLHG VNRGPVQCRK RWSNLVSDFK KIRTWESQVK 120 EEGESFWVMR NDLRREKKLP GHFDREVYAV LNGNSYQAVM GMSVDGREAD GTCVADTEDE 180 DEEDVNRGIE TGVVFDSGTH ARPETLISHL EKCAQGKIFR GPNAQVARES PRSNSPAPMP 240 LSEKHCQHFH QAYSNQGPAK GKQPGPRFWT RRVSQEDVKR RRLSLDKCED FNLSQHLIKV 300 LERNNCVLNA QLETQRMNSQ LDREQQKAHT DILSSALSKI CDAFSRIADK F

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MAPGPNDRLE KATSSASVLD EEHQAVERTN SENKSTRHPR WTKQETLILV EGKNIAESQG  60
RRGRRSSSLF VTGQHEPKWD SVSSYCRLHG VNRGPVQCRK RWSNLVSDFK KIRTWESQVK  120
EEGESFWVMR NDLRREKKLP GHFDREVYAV LNGNSYQAVM GMSVDGREAD GTCVADTEDE  180
DEEDVNRGIE TGVVFDSGTH ARPETLISHL EKCAQGKIFR GPNAQVARES PRSNSPAPMP  240
LSEKHCQHFH QAYSNQGPAK GKQPGPRFWT RRVSQEDVKR RRLSLDKCED FNLSQHLIKV  300
LERNNCVLNA QLETQRMNSQ LDREQQKAHT DILSSALSKI CDAFSRIADK F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	283	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-72	Trihelix family protein