PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027123127.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Dof
Protein Properties Length: 320aa    MW: 35356.4 Da    PI: 6.5689
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027123127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.53.9e-4051111262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +++al+cprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  XP_027123127.1  51 HDQALNCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 111
                     7899******************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGLTSLQVCM DSSDWLQGTI HEETGMDSSS PSGDMLTCSR PLIERRLRPQ HDQALNCPRC  60
DSTHTKFCYY NNYSLSQPRY FCKTCRRYWT KGGTLRNIPV GGGCRKNKKV SSKKSNDQHL  120
HQQSGSNPQN FGSSSSSSAT SPTMNPTDLH LAFPDQMQFQ HLSNILGNAN GFMENKYNLM  180
LENPTPIDFM ENKYEALVGN SSRNYDFMGN GDMGILGCEM SSPAGMISAP NFHNFCTAPF  240
GNMSIDGNTP GTLMLPYEAH EDQNAMDVKP NAKLLSLEWH DQQGCSDHGG KDSYGYYNGV  300
GSSWPGLMNG YGTPTTNPLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.11e-50Dof family protein