PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027123006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 1281aa MW: 141535 Da PI: 8.487 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 1190 | 1212 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H XP_027123006.1 1190 CPvkGCGKKFFSHKYLVQHRRVH 1212 9999*****************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1281 aa Download sequence |
MASEASSTPV ASGNIEVFSW LKTLPVAPEY HPTLAEFQDP IAYIFKIEKE ASQYGICKIV 60 PPVPAPHKKT AVSNLNKSLV ARSGSPTFTT RQQQIGFCPR KQRPVQKPVW QSGENYTLEV 120 FEAKAKAFER NYLKKSRKKC LTPLEIETLY WKAIVDKPFS VEYANDMPGS AFAPRRGGKE 180 GGGEGSNVNA NVTVGDTEWN MRGVSRAKGS LLTFMKEEIP GVTSPMVYVA MMFSWFAWHV 240 EDHDLHSLNY LHTGAGKTWY GVPWDAAAAF EEVIRVHGYG GEINPLVTFS TLGEKTTVMS 300 PEVLIDAGVP CCRLVQNAGE FVVTFPRAYH SGFSHGFNCG EAANIATPGW LTVAKDAAIR 360 RASINCPPMV SHFQLLYDLA LSSCSRVPRG VRMEPRSSRL KDKKKGEGEM LVKDLFVQDV 420 MQNNDLLYML AEGSSVVILP QNSVVSSFSS NSKAGSQSQV QPGLFPSLGS PDLMMKTTKS 480 LLSEGIVQER KRGVLQGTGS CSMKETVSPS CFDKRLPCSV RGNEFSALAS ESKNMETEKG 540 RASRGDRLSE QGLFSCVTCG ILCFACVAIV QPTDAAATYL ITADRSEFKD WGETSDVLTV 600 VNGDEVPPKS DSCSGWMYKR NPDELFDVPV QSGGLYQSVD DEIVGLIPNT EAQKDTSSLG 660 LLALTYGNSS DSDEDDVDAN NHTEACQNEA KDCSPESGLH CHDAGLHEGG SRNNVISCSE 720 FSCADVVPLQ IIGSSDKQGT TKSTSESRRH PPPDGTIEYK RRSFPSMEID NLADRCRHQV 780 KEQDASSPSP LAHKAETITS TAIVEFENKT LPFAGRPDED SSRMHVFCLQ HAVQVEKQLR 840 SIGGVNVLLL CHPDYPNVEA QAKKMAEELG GHYVWSSISF RQASKEDEET IQAALESQEA 900 IHGNGDWAVK LGINLYYSAS LSRSPLYSKQ MPYNFLIYNA FGRSSPVNSP TKDDSLGNWP 960 GKPKKTVVAG KWCGKVWMSN QVHPFLAERD EEEQERSIPS CMKADLKPER PLESTHVQTG 1020 ETTARTCRTG RKRKTAAEIR PAVKAKSAKV EERDKAAEDS PVNHSQHQCK SNRRNTQRKK 1080 ENVESSNKGN KVVRNRKQFN LETEEEQEGG PSTRLRKRAE KPSKGQGAKS LETKSVAKKQ 1140 PNGLKAKKSP AGSNKMKVKD EKTEYPCDME GCTMGFGSKQ ELVLHKRNIC PVKGCGKKFF 1200 SHKYLVQHRR VHVDDRPLKC PWKGCKMSFK WAWARTEHIR VHTGARPYVC AEPGCNQTFR 1260 FVSDFSRHKR KTGHSSSKKG S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 183 | GGKEGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 0.0 | C2H2 family protein |