PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123001.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 836aa MW: 92490 Da PI: 4.4631

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.7	1.8e-17	32	123	1	100
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkvl+ d ++ + l lp+kfa++ ++ + ++ +led++g +W+v+l+ k+s +++GW eF +++L++gDf++F +++ + f vv XP_027123001.1 32 FFKVLVG-DDFS-QFLLLPRKFADTVMYLAN--QETKLEDSNGVQWTVTLSLVKNS--LAFSRGWPEFSLDHNLQAGDFLLFNYIKGTHF--VVY 118 7777733.4444.459*****99977744..489**********666666..789*******************987777..* PP EE-SS CS B3 96 vfrks 100 +f+ks XP_027123001.1 119 IFDKS 123 **985 PP

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence
MVVMAGACEE CIRNCQLTHR NKMDLSPSVT RFFKVLVGDD FSQFLLLPRK FADTVMYLAN 60 QETKLEDSNG VQWTVTLSLV KNSLAFSRGW PEFSLDHNLQ AGDFLLFNYI KGTHFVVYIF 120 DKSCCERASD KIGLPRKRAR TRGSISSGGK PCEKIDTNPI NRQNSSTSGV SGSNSKNNHI 180 LPTTTNSTLN AEGGNGNWSF LDSSFDMMID WDAGPGPGER RMCLYDLSEF ELQGDKEVAD 240 TDKGIDAVQS TSGHTQTSMR SQDEADKDPT GTKVGTKDLK MATFTEETDM GMMVNEKDLE 300 AKGDMLLERD TDKGIDAVQG TSEHTQTSLR CQNGADKDPT GPEDLKLATF TEENDIGVMV 360 NDDDLKPEDG MLLKCDTDKG IDAVQGSSGH SQTSLRCQDG ADKDPTGAED LKIATITEET 420 DIGMMVNVNN LEAEDDMLSE RDSDRGINAV QGTSDHGIGM MVNYDELKPE DGMLLKCDTD 480 KGIDAVQGSS DHSQTSLRCQ DGADKDPPGT EDLKIATFTE ETDIGIMVND NNLEAKDDML 540 PEHDSDRGIN AVEGTSDHRE VSLRCQDGAD KDPTRTKDLE TATFTEETDI GMLVNDYNLG 600 SKDAILLECE KVPLADRSNS LPTVLCPELG EKGGNMSNVY IQLQNAERSN KKYDVDWSSP 660 YADEGACFRD SQEEFAGETK KMVRKEHPDT REEGDSSAKR LRGLKPLSIK EIGSSSQGPC 720 VCKPVKLEPV DLLDIPSSVT ESLTCLAMMD GRPYLELPAK LPGITYRKGM DRKSVLLQDQ 780 EKRFWPALYY YRSGFHVLTG CWDKFNKEHR IQAGDHYIFQ AEHVYRGIYK VSVLHQ

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence

MVVMAGACEE CIRNCQLTHR NKMDLSPSVT RFFKVLVGDD FSQFLLLPRK FADTVMYLAN  60
QETKLEDSNG VQWTVTLSLV KNSLAFSRGW PEFSLDHNLQ AGDFLLFNYI KGTHFVVYIF  120
DKSCCERASD KIGLPRKRAR TRGSISSGGK PCEKIDTNPI NRQNSSTSGV SGSNSKNNHI  180
LPTTTNSTLN AEGGNGNWSF LDSSFDMMID WDAGPGPGER RMCLYDLSEF ELQGDKEVAD  240
TDKGIDAVQS TSGHTQTSMR SQDEADKDPT GTKVGTKDLK MATFTEETDM GMMVNEKDLE  300
AKGDMLLERD TDKGIDAVQG TSEHTQTSLR CQNGADKDPT GPEDLKLATF TEENDIGVMV  360
NDDDLKPEDG MLLKCDTDKG IDAVQGSSGH SQTSLRCQDG ADKDPTGAED LKIATITEET  420
DIGMMVNVNN LEAEDDMLSE RDSDRGINAV QGTSDHGIGM MVNYDELKPE DGMLLKCDTD  480
KGIDAVQGSS DHSQTSLRCQ DGADKDPPGT EDLKIATFTE ETDIGIMVND NNLEAKDDML  540
PEHDSDRGIN AVEGTSDHRE VSLRCQDGAD KDPTRTKDLE TATFTEETDI GMLVNDYNLG  600
SKDAILLECE KVPLADRSNS LPTVLCPELG EKGGNMSNVY IQLQNAERSN KKYDVDWSSP  660
YADEGACFRD SQEEFAGETK KMVRKEHPDT REEGDSSAKR LRGLKPLSIK EIGSSSQGPC  720
VCKPVKLEPV DLLDIPSSVT ESLTCLAMMD GRPYLELPAK LPGITYRKGM DRKSVLLQDQ  780
EKRFWPALYY YRSGFHVLTG CWDKFNKEHR IQAGDHYIFQ AEHVYRGIYK VSVLHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	PRKRART

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	5e-12	B3 family protein