PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122907.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 457aa MW: 50604.6 Da PI: 6.5783

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122907.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.4e-16	36	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ XP_027122907.1 36 REKWTEEEHQRFLEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 80 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MRAHLETTEA QTQALTEMGN GYALKVRKPY TIKKQREKWT EEEHQRFLEA LKLYGRAWRQ 60 IEEHVGTKTA IQIRSHAQKF FAKVARDSNE CEGSLNPIEI PPPRPKKKPA HPYPRKVTDV 120 TKTTLDDPHQ PEQAPPFKRS GEERNSRSPT SVLSALGSDT SGSPSSEPQR SHLSPVSYTT 180 DDAHSAIVQL TENDNECMTS DSSVEEEKEY GHAILLATSA TQDDESAMEL DLLTFGRACP 240 AEDPAFEQAP ATIKLFGRTV EIKENQKLSS SAPENSELSP SHSMKEKLDI RNGRHMIGSA 300 ENTIDSQVNL SLVPSCITPV ACLVPQYAVS EDFGQLGSIP HMIPMWTWSH GPLLPNLSLS 360 NQTAIENFGN NPYKGAVKNE ESQREISLTG SNDGLVTAAK RGQKIFNAIQ SKNLGNVERQ 420 RSTKGFVPYK RCLAERDATS SLVAAEEREG QRARICS

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MRAHLETTEA QTQALTEMGN GYALKVRKPY TIKKQREKWT EEEHQRFLEA LKLYGRAWRQ  60
IEEHVGTKTA IQIRSHAQKF FAKVARDSNE CEGSLNPIEI PPPRPKKKPA HPYPRKVTDV  120
TKTTLDDPHQ PEQAPPFKRS GEERNSRSPT SVLSALGSDT SGSPSSEPQR SHLSPVSYTT  180
DDAHSAIVQL TENDNECMTS DSSVEEEKEY GHAILLATSA TQDDESAMEL DLLTFGRACP  240
AEDPAFEQAP ATIKLFGRTV EIKENQKLSS SAPENSELSP SHSMKEKLDI RNGRHMIGSA  300
ENTIDSQVNL SLVPSCITPV ACLVPQYAVS EDFGQLGSIP HMIPMWTWSH GPLLPNLSLS  360
NQTAIENFGN NPYKGAVKNE ESQREISLTG SNDGLVTAAK RGQKIFNAIQ SKNLGNVERQ  420
RSTKGFVPYK RCLAERDATS SLVAAEEREG QRARICS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-39	MYB_related family protein