PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122366.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 330aa    MW: 37063.1 Da    PI: 4.8907
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.93.4e-38101101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCaaCk++rrkC++dCvlapyfpa+q+k+f+n+h+lFG+s+++k+l++l   e++e+am+s+ ye+++r r Pv+G++g++++l++ql+ + +el
  XP_027122366.1  10 ACAACKYQRRKCSSDCVLAPYFPANQHKSFQNAHRLFGVSKIVKILEQLsTLEQQEEAMKSIKYESDMRERYPVHGCAGIVHHLREQLRLATEEL 104
                     7************************************************445669**************************************** PP

          DUF260  95 allkee 100
                     +++ ++
  XP_027122366.1 105 HYVYAQ 110
                     998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MTVKGGTSPA CAACKYQRRK CSSDCVLAPY FPANQHKSFQ NAHRLFGVSK IVKILEQLST  60
LEQQEEAMKS IKYESDMRER YPVHGCAGIV HHLREQLRLA TEELHYVYAQ LAAHREQIPN  120
NQQQLGCSSS DYSSSHQPQL LHSGVMINNS CSTTQSIDAL PFFQHHYAGS MHDCEMPFTM  180
DYFLANENYG DDTDANDDKG VRHRDSNDHV AKPLLGLEPV YTNTPPDPYC DLIRNNVNSV  240
VGNQPEVIAN SNQAFGIQPE IKVFDQDYED MPPFNAMVDD RQSYVETKEA CESSSVESSF  300
RDFPQPAEQE SGMESELRTA AACFSLTSVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-37LBD family protein