PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122228.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 159aa    MW: 18845.4 Da    PI: 6.5176
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.32.7e-31121451128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkd 89 
                     +p+G+rF Ptdeelv++yL++kv  k+l+++ +  i+  d+y+ +P+ L  + +++ +e+ew fF+ +d+    ++r++r++    g+W+  g++
  XP_027122228.1  12 MPVGYRFVPTDEELVKYYLANKVLYKPLPVKIIreIDAHDLYSKHPKCLVgNgTFNDNEREWLFFIYKDEYFLGKTRSTRMVGngIGFWRFIGEE 106
                     699************************8874433477778*********74347778899**********99999*****87633678******* PP

             NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++++++g     k  L++++g+ p+++kt+W m+eyrl
  XP_027122228.1 107 EPIHNSEGDIFAFKIYLTYFSGSPPHAKKTHWRMEEYRL 145
                     *************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
METSQHLLEL EMPVGYRFVP TDEELVKYYL ANKVLYKPLP VKIIREIDAH DLYSKHPKCL  60
VGNGTFNDNE REWLFFIYKD EYFLGKTRST RMVGNGIGFW RFIGEEEPIH NSEGDIFAFK  120
IYLTYFSGSP PHAKKTHWRM EEYRLQTEIN GRNKQEDGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.15e-30NAC family protein