PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122015.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 323aa    MW: 37353.8 Da    PI: 9.2703
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.42.5e-1871462128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiy..kvePwdLpk................kvkaeekewyfFskrdkkyatgkrknra 77 
                      pGfrF+P+d+el+ +yLk k++g +  + ++v+ e ++y  ++ Pw L +                k     +e   ++ ++  +  +++  r+
  XP_027122015.1   7 SPGFRFSPSDQELL-YYLKMKAKGMSfRPWNDVVLEKNLYakNAAPWMLFNnddpwqvtskvdaalgK---IYEEKVLYVVTKLVKIGSNKIVRS 97 
                     79************.***********544456666666662245788885336677666655443221...222444555555555567789999 PP

             NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + sg+W +   + +v +++g+++g kk+L +  g+  + + ++W+mh y+l
  XP_027122015.1  98 VVSGTWDSATGKYKVWNSQGQVMGFKKILNLR-GKGTE-VMSNWMMHAYHL 146
                     99****965555677777*************7.77776.79********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MKKFRMSPGF RFSPSDQELL YYLKMKAKGM SFRPWNDVVL EKNLYAKNAA PWMLFNNDDP  60
WQVTSKVDAA LGKIYEEKVL YVVTKLVKIG SNKIVRSVVS GTWDSATGKY KVWNSQGQVM  120
GFKKILNLRG KGTEVMSNWM MHAYHLSTVS LQEVEDNDYV ICRIKWDYSR NIWDVDQKVQ  180
ESGGLRKLGK SKRINQEIPD GKKVCRKGSN SSVLTNDGVL IAKSEAYYGE NDEYEILIKE  240
KSRFDQESSI GETVCSSGRD TVVVNEGELI TERSLFLEAE VQETEAHYER SDECQILLKR  300
NQYLIRKVQL EKWFVKRAAI VFW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.13e-12NAC family protein