PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121887.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 518aa MW: 60390.1 Da PI: 9.2735

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.6	3.7e-22	11	98	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++ Fsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++l+leHnHel XP_027121887.1 11 KFYNKYAFKMDFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDLVLEHNHEL 98 6***************9998.8999************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MEFNSEEDAY KFYNKYAFKM DFSVRKDYLN KDKDGVTTSR RYSCCKEGVK RKYEGDVMPK 60 RTRAPTKTGC GAKMVIVLFR GTMKYRVHDL VLEHNHELHI AQCAHMMPSQ RKVSVAQGFQ 120 AEISEDAGLS LKQSHELMGK EAGGMGNVGY TRDDLKRYFR TRRERSLKYG EAGMLIDYNF 180 FGDVVTFDTT YKTNKEYRPL EVFVGFNQHR RNFMKHLGNH HKENSDLPYM FGACMYEFEE 240 VEQFNRVWEA MVKEHNLEKN NEGLSGLYRI RDKWFFRHFN RVVDEKRHNE LIAEYKMRQK 300 LPMIGLRQTP MLVHASETYS PTVFVAFQNE YGESTAMVIL RQQDAAMFVE FAVMRYDGGP 360 ERTGVFNRND LSVRCSCKKY ENEGILYGHA LKVFDTVGIK IISPEYIKRR WTKRARAGDC 420 FDRRGQEVVA DPKVMISTRY RELAPTMIKV STRAAMSEDT SKVVITVISD LSKRVELLLS 480 ESEEQPLQNQ KNLNMEERDK IEIVNEMGEA VVARGIKK

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MEFNSEEDAY KFYNKYAFKM DFSVRKDYLN KDKDGVTTSR RYSCCKEGVK RKYEGDVMPK  60
RTRAPTKTGC GAKMVIVLFR GTMKYRVHDL VLEHNHELHI AQCAHMMPSQ RKVSVAQGFQ  120
AEISEDAGLS LKQSHELMGK EAGGMGNVGY TRDDLKRYFR TRRERSLKYG EAGMLIDYNF  180
FGDVVTFDTT YKTNKEYRPL EVFVGFNQHR RNFMKHLGNH HKENSDLPYM FGACMYEFEE  240
VEQFNRVWEA MVKEHNLEKN NEGLSGLYRI RDKWFFRHFN RVVDEKRHNE LIAEYKMRQK  300
LPMIGLRQTP MLVHASETYS PTVFVAFQNE YGESTAMVIL RQQDAAMFVE FAVMRYDGGP  360
ERTGVFNRND LSVRCSCKKY ENEGILYGHA LKVFDTVGIK IISPEYIKRR WTKRARAGDC  420
FDRRGQEVVA DPKVMISTRY RELAPTMIKV STRAAMSEDT SKVVITVISD LSKRVELLLS  480
ESEEQPLQNQ KNLNMEERDK IEIVNEMGEA VVARGIKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-29	FAR1 family protein