PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121161.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 811aa MW: 89866.1 Da PI: 7.2366

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	116.7	1.2e-36	150	226	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC ad+se+k yh+rh+vC ++++a +v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k XP_027121161.1 150 RCQVTGCGADISELKGYHKRHRVCLQCANAGAVVLDGQSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKP 226 6***********************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence
MDNSSSPSIA PISPSRHQTH PKPLDMSNAS MISAILEDPT NSSLFDWSDF LDFNIDVEPF 60 ASAPFAADQQ QQEGPVSPSD SDQVSPLAED PGRVRKRDPR LVCSNFLAGR VPCACPELDE 120 KLELEEVTAL GEPGKKRPRT VRVPAGSNAR CQVTGCGADI SELKGYHKRH RVCLQCANAG 180 AVVLDGQSKR YCQQCGKFHI LSDFDEGKRS CRRKLERHNN RRRRKPNDPK GTVETEHQQT 240 TVAEDVSGDD DAGKDGICLS SENAEKETLL ESEGQQSTLC SAHDSQNIQN NSIVTSGSYG 300 DTQIYGEKEN PKYSRSPSFC DNKNAFSSVC PTGRISFKLY DWNPAEFPRR LRHQIFQWLA 360 SMPVELEGYI RPGCTILTVF IAMPKFMWVK LSEKPAECLH NLVLSPGSML SGRDTFHIYL 420 NNMIFRVIKG GSSLFKVKVN EQAPKLHHVH PTCFEAGKPM EFVACGSNLL PSKLRFLVSF 480 TGKYLAHDLC VSSSCGKTEG DAGSLNHHSF KISVPQTEPG IFGPAFVEVE NEFGLSNFIP 540 VLIGDKEICA EMNIMQQRFA AKPCIKGLQL SATSSCGVSD LRQTEFSEFI MDVAWSLKKP 600 VMKSSTPFLT SVQIKRFTNL LNFLIENEST AILDRVVYYT RVLIDNNFVA TNITDADMEH 660 LWMNLDKARD ILYQKLQRNE HQLNNSRKFL LGERSFNRTS LDHMSSVATS NSQGEEVTSK 720 AKLTARVDIS SHEGGTTVPL LTGEVVMRVN VSERPGKSCS PLLIKTGFSS RPLIFALTAA 780 TVCIGLCAVL FHPEKVGEVA TTIRKCLEQN S

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence

MDNSSSPSIA PISPSRHQTH PKPLDMSNAS MISAILEDPT NSSLFDWSDF LDFNIDVEPF  60
ASAPFAADQQ QQEGPVSPSD SDQVSPLAED PGRVRKRDPR LVCSNFLAGR VPCACPELDE  120
KLELEEVTAL GEPGKKRPRT VRVPAGSNAR CQVTGCGADI SELKGYHKRH RVCLQCANAG  180
AVVLDGQSKR YCQQCGKFHI LSDFDEGKRS CRRKLERHNN RRRRKPNDPK GTVETEHQQT  240
TVAEDVSGDD DAGKDGICLS SENAEKETLL ESEGQQSTLC SAHDSQNIQN NSIVTSGSYG  300
DTQIYGEKEN PKYSRSPSFC DNKNAFSSVC PTGRISFKLY DWNPAEFPRR LRHQIFQWLA  360
SMPVELEGYI RPGCTILTVF IAMPKFMWVK LSEKPAECLH NLVLSPGSML SGRDTFHIYL  420
NNMIFRVIKG GSSLFKVKVN EQAPKLHHVH PTCFEAGKPM EFVACGSNLL PSKLRFLVSF  480
TGKYLAHDLC VSSSCGKTEG DAGSLNHHSF KISVPQTEPG IFGPAFVEVE NEFGLSNFIP  540
VLIGDKEICA EMNIMQQRFA AKPCIKGLQL SATSSCGVSD LRQTEFSEFI MDVAWSLKKP  600
VMKSSTPFLT SVQIKRFTNL LNFLIENEST AILDRVVYYT RVLIDNNFVA TNITDADMEH  660
LWMNLDKARD ILYQKLQRNE HQLNNSRKFL LGERSFNRTS LDHMSSVATS NSQGEEVTSK  720
AKLTARVDIS SHEGGTTVPL LTGEVVMRVN VSERPGKSCS PLLIKTGFSS RPLIFALTAA  780
TVCIGLCAVL FHPEKVGEVA TTIRKCLEQN S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	224	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein