PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027120842.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 309aa    MW: 34108.2 Da    PI: 4.8231
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027120842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS86.73.8e-271062644155
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fsevsPilkf 93 
                     lL ++A  +s++++  a + L    + a  +g+p+qR+a +f+ AL++r++r+v +++++   + ++++++++e++++l+      +   P+ ++
  XP_027120842.1 106 LLQAAAVNFSNEKFDSACNSLGICVQSAFLTGNPLQRVAYFFATALQERITREVGTMVHSEaLAGNQRKQTVDEAFTSLQPavieCQYELPFCQI 200
                     455667778999999*************************************77666665514445555556666666554555655567***** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.sk 155
                     s+++a qaI++ v++++rvH +D +i+ G  Wp ++qaLa+R   +   l+iT+vg++++  ++
  XP_027120842.1 201 SQFAAIQAIMDNVASAKRVHLVDPGIKTGSYWPVMMQALADRYdCPLELLKITAVGPSKQIiEE 264
                     ******************************************9445569*******96654433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MARARLSWLT SQYSDVVSMV VSDCVCADSG LPPKKQEDFE LELDFKPQLL SRLAFPADAI  60
IKMARAKLLQ FTSISSGGAS VLISDDVYAD LGLSYDQHKD FEPALLLQAA AVNFSNEKFD  120
SACNSLGICV QSAFLTGNPL QRVAYFFATA LQERITREVG TMVHSEALAG NQRKQTVDEA  180
FTSLQPAVIE CQYELPFCQI SQFAAIQAIM DNVASAKRVH LVDPGIKTGS YWPVMMQALA  240
DRYDCPLELL KITAVGPSKQ IIEEVVVSEI RYLEADFFEL EADEVLAVHS RLSKGISKRH  300
IVRFGILIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-13GRAS family protein