PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027120569.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 276aa    MW: 32048.7 Da    PI: 10.7645
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027120569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.38.6e-11166255277
                     EEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT CS
              B3   2 fkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkeg 77 
                     +k+l +sdv    +r+++p k + +            +g+k+e+++ +l  +s  ++++kl+     +s++yvl +GW+eFv+ ngL++g
  XP_027120569.1 166 KKKLYTSDVDPGlQRFSIPCKQVVNEfltekerkrfnKGNKQEEIDAILIGSSFVQYNIKLRKwyMSSSSSYVLVSGWNEFVEKNGLESG 255
                     58889999987779999998887555699999999998899999*****************7644566666*****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MATFSFRRRP RKCSHPLRSY TNSIQDKFLY WPLIEEKVTT LKKSRQSNTR KIEGSSKNTT  60
RLPNLDDHRQ KINQEKRMQE KLPFKNSTGK RHSEVIPNGK RTVKRKVVNS DEQTVLQNNG  120
EGNVHENLVL RNGININRPS SQEQPEKLKN FVRGLGDTGD PVLVIKKKLY TSDVDPGLQR  180
FSIPCKQVVN EFLTEKERKR FNKGNKQEEI DAILIGSSFV QYNIKLRKWY MSSSSSYVLV  240
SGWNEFVEKN GLESGIDVQL RSFKRGSKLY FILIKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712RRRPRK