PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027120564.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 256aa    MW: 29666.6 Da    PI: 11.035
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027120564.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-12145240282
                     EEE-..-HHHHT.T-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
              B3   2 fkvltpsdvlks.grlvlpkkfaeeh............ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                     +k l psdv+++ +rl++p k +++h            +g+k+e+++ +l  +s  + +++++      sg+y+lt+GW++ v+ ngLk+g  v 
  XP_027120564.1 145 EKRLFPSDVSAKlHRLSIPVKQVANHefltegerkrfnNGNKQEKIDAILVEPSLSESKIRFKKwyIHDSGMYILTSGWNDVVERNGLKQGTLVQ 239
                     68899***99888*************************8888899999999987765555553323889999*******************8876 PP

                     E CS
              B3  82 F 82 
                     +
  XP_027120564.1 240 L 240
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MAILSSQKRE EMRRNESFRR RPRKSSKPCR ARTNSVADQF RFWPFLVEKT ETPTQKSCVN  60
KGKKMIGLAL PNLDQELPTK KSCGKLRAEA KTSQESRKIE IIFKKKLVKA KAQVFPPPSA  120
QLPIDFKNHM SRKLGATRDP VLVIEKRLFP SDVSAKLHRL SIPVKQVANH EFLTEGERKR  180
FNNGNKQEKI DAILVEPSLS ESKIRFKKWY IHDSGMYILT SGWNDVVERN GLKQGTLVQL  240
WSFRKESQLY FALIRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924RRRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.18e-13B3 family protein