PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027119172.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 362aa MW: 41553.4 Da PI: 4.6681

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027119172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.5	2.9e-35	44	135	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++ ws+ +nsf+v+d+ +fa + Lp+yFkh+nf+SFvRQLn+YgF+kv+ e+ weF+++ F +g+++ll++ XP_027119172.1 44 FLTKTYDLVDDPSTDHIVCWSKGNNSFIVWDPLTFAMNFLPRYFKHNNFSSFVRQLNTYGFRKVDAEK---------WEFSNEGFLRGQRHLLRN 129 9**************************************************************998.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k+ XP_027119172.1 130 IRRRKT 135 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MNPLGSSVKE EFPAGSSSWY SDETFSSATP QPMEGLHESG PPPFLTKTYD LVDDPSTDHI 60 VCWSKGNNSF IVWDPLTFAM NFLPRYFKHN NFSSFVRQLN TYGFRKVDAE KWEFSNEGFL 120 RGQRHLLRNI RRRKTPPHLQ SSNPNLESCL EVGRFGLDAE VDRLRRDKQV LMLELVRLRQ 180 QQQNTKAYLK TMEQRLRGTE NKQQQMMTFL ARAIQNPRIL EQLVQQKDKR KELEEAIGNK 240 RRRPIDKGPS FSVGVGEFGQ EGEEVNDYVK LECQDYGHDL TGLTDFELNT LAINMQEPTP 300 PPMNLEEEYV GKEDDSFDDG FWDGLIHEGI ENDIGLRGGE GEDLEDLDLL TDQLGFLGSN 360 PP

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MNPLGSSVKE EFPAGSSSWY SDETFSSATP QPMEGLHESG PPPFLTKTYD LVDDPSTDHI  60
VCWSKGNNSF IVWDPLTFAM NFLPRYFKHN NFSSFVRQLN TYGFRKVDAE KWEFSNEGFL  120
RGQRHLLRNI RRRKTPPHLQ SSNPNLESCL EVGRFGLDAE VDRLRRDKQV LMLELVRLRQ  180
QQQNTKAYLK TMEQRLRGTE NKQQQMMTFL ARAIQNPRIL EQLVQQKDKR KELEEAIGNK  240
RRRPIDKGPS FSVGVGEFGQ EGEEVNDYVK LECQDYGHDL TGLTDFELNT LAINMQEPTP  300
PPMNLEEEYV GKEDDSFDDG FWDGLIHEGI ENDIGLRGGE GEDLEDLDLL TDQLGFLGSN  360
PP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	243	KRKELEEAIGNKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-116	HSF family protein