PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027118821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 39186.4 Da PI: 7.5627 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 44 | 91 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl XP_027118821.1 44 RGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 91 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 97 | 140 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_027118821.1 97 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 140 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence |
MDHVKGGGRV CNQQQLQQQQ QISASSTTIA DQEDMMMMMM DLRRGPWTVE EDFTLINYIA 60 HHGEGRWNSL ARCAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHSRWGNRWS 120 KIAQHLPGRT DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAAAA 180 GANSSTAARA TAATATTTSN SNYHQGNTSM VADVGSGGQV ILPQASTYGG RVTMNPSRST 240 SYTPENSSTP ASSDSFTAQF SPVSDLTDCY NYPVKQSNNQ DYYQANNQLS YGETLTSPTG 300 YFNQALDFHL MEQNNAWMDG GDVSDNLWND EDAWFFQQQL NSNTFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-88 | MYB family protein |