PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027118606.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 604aa MW: 70316.7 Da PI: 9.0461

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027118606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.3	5e-18	55	145	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY ++k+vGF +r + +kk ++g +t +++vC++eg+r+ + k +++++ + tr+gC a++ v+ +k +k+ +++++ +HnH+la XP_027118606.1 55 EFYLCHSKMVGFGIRERDEKKD-QKGIVTYKRWVCNREGFRNIKWLKlGNRKKEAKRLTRVGCLATIIVQWNKdIQKFTIKRFSMDHNHQLA 145 69************999888.7777***********998776788889999*********99989*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MEEMTAHVDE LVQLSNKSAK LGGGMSWRTI VDRLDKLSSD EIQLLTFDSV EDAREFYLCH 60 SKMVGFGIRE RDEKKDQKGI VTYKRWVCNR EGFRNIKWLK LGNRKKEAKR LTRVGCLATI 120 IVQWNKDIQK FTIKRFSMDH NHQLANQEFV QFLRSHRNVN PADLEHGVGI RIPQIVDLQA 180 YQAGGHNKMG YTQKDLQNVV DQFHRNAIQV GDASQVLAYL DGRANGEPNF FYKYAVDGEK 240 RLIRLFWTDS QSRLDYQSFG DVLVFDSTYR TNAYRKPLVI LAGVNHHYVT TIFGCALIAD 300 ETEDTYKWVL KTFLEAMEKK APSSVVTDGD GAMRNAIKAV IPCARHRLCA WHLKRNVVTH 360 TNKGFVLDFD VAMNMNCSHE EFERRWHLLV EKHNLRDNQW VVDLYNKREK WAAAFLRGHF 420 FAGMKSTQRS EQLNATAHKY LQFKMLLYPF AQRFELFLSK VRQNEHKEEC ITSQSSPVLI 480 THLRELEGNV ASIFTRKIFF KIRDEISAEA SLRLISVVDQ DKVKLYTFIE YLHRICSWQV 540 ELDKSERTIN CSCKKLESDG IPCSHAFAVM KAEDMDEIPK SCILFRWTQQ LRHSKDMMKL 600 ESAL

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MEEMTAHVDE LVQLSNKSAK LGGGMSWRTI VDRLDKLSSD EIQLLTFDSV EDAREFYLCH  60
SKMVGFGIRE RDEKKDQKGI VTYKRWVCNR EGFRNIKWLK LGNRKKEAKR LTRVGCLATI  120
IVQWNKDIQK FTIKRFSMDH NHQLANQEFV QFLRSHRNVN PADLEHGVGI RIPQIVDLQA  180
YQAGGHNKMG YTQKDLQNVV DQFHRNAIQV GDASQVLAYL DGRANGEPNF FYKYAVDGEK  240
RLIRLFWTDS QSRLDYQSFG DVLVFDSTYR TNAYRKPLVI LAGVNHHYVT TIFGCALIAD  300
ETEDTYKWVL KTFLEAMEKK APSSVVTDGD GAMRNAIKAV IPCARHRLCA WHLKRNVVTH  360
TNKGFVLDFD VAMNMNCSHE EFERRWHLLV EKHNLRDNQW VVDLYNKREK WAAAFLRGHF  420
FAGMKSTQRS EQLNATAHKY LQFKMLLYPF AQRFELFLSK VRQNEHKEEC ITSQSSPVLI  480
THLRELEGNV ASIFTRKIFF KIRDEISAEA SLRLISVVDQ DKVKLYTFIE YLHRICSWQV  540
ELDKSERTIN CSCKKLESDG IPCSHAFAVM KAEDMDEIPK SCILFRWTQQ LRHSKDMMKL  600
ESAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1 family protein