PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027118400.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 703aa MW: 81623.9 Da PI: 9.3244

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027118400.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.4	8.9e-22	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFs+rk++ +k +++ +t+r++ C keg +++ + + + ++tra t+tgC ak+++ + + + k++v++l+leHnHel XP_027118400.1 26 KFYNKYAFKMGFSLRKDYLNKD-KDDVTTSRRYSCCKEGVKRRYECD-VMPKTTRAPTKTGCGAKIVIVLFRgTMKYRVHDLVLEHNHEL 113 6*****************99.6666************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MDCSKLTENG TPELGMEFNS EEDAYKFYNK YAFKMGFSLR KDYLNKDKDD VTTSRRYSCC 60 KEGVKRRYEC DVMPKTTRAP TKTGCGAKIV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMPSQRKVSV AQGFQAEISE DAGLSLKQSH KLMGMEAGGM GNVGYTRDDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPFFFHAVQL DCEEQITNIF WADAGMLIDY NFFGDVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKHPSTIL 300 THQDHAMAAA LSIVMPETFQ GLCTFHIRRN FMKYLGNHYK ENNDLPYMFG ACMYEFEEVK 360 QFNRVWEAMV KKHNLENNEW LSGLYRIRDK WVRCIMKEKW TAGMRSTQFS ESLNAAIKNH 420 LKLDHDLVQF FRHFNRVVDE KRYNELIAEY EMRQKLPMVG LRQTPILVHA SETYSPTVFV 480 AFQNEYGEST TMVILRQQDA AMFVEFAVMR YDGGPKKTVV FNRNDLSVRC SYKKYKNEGI 540 LCGHALKVFD TVGIKIIPPE YIKRRWTKRA RAGDCFDRRG QEVVADPKVM ISTRYRELAP 600 AMIKVATRAA MSEDTSKVAI TVISDLSKRV ELLLSESEEQ PLQNQKNLNM EERDKIEIVN 660 EMGEAVVARG IKKRGGGKKS RVMRSWVDKF DRVKRKSRLS RTT

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MDCSKLTENG TPELGMEFNS EEDAYKFYNK YAFKMGFSLR KDYLNKDKDD VTTSRRYSCC  60
KEGVKRRYEC DVMPKTTRAP TKTGCGAKIV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSV AQGFQAEISE DAGLSLKQSH KLMGMEAGGM GNVGYTRDDL KRYLRTRRER  180
SLKYGEAGSM LNYFQEQTLE NPFFFHAVQL DCEEQITNIF WADAGMLIDY NFFGDVVTFD  240
TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKHPSTIL  300
THQDHAMAAA LSIVMPETFQ GLCTFHIRRN FMKYLGNHYK ENNDLPYMFG ACMYEFEEVK  360
QFNRVWEAMV KKHNLENNEW LSGLYRIRDK WVRCIMKEKW TAGMRSTQFS ESLNAAIKNH  420
LKLDHDLVQF FRHFNRVVDE KRYNELIAEY EMRQKLPMVG LRQTPILVHA SETYSPTVFV  480
AFQNEYGEST TMVILRQQDA AMFVEFAVMR YDGGPKKTVV FNRNDLSVRC SYKKYKNEGI  540
LCGHALKVFD TVGIKIIPPE YIKRRWTKRA RAGDCFDRRG QEVVADPKVM ISTRYRELAP  600
AMIKVATRAA MSEDTSKVAI TVISDLSKRV ELLLSESEEQ PLQNQKNLNM EERDKIEIVN  660
EMGEAVVARG IKKRGGGKKS RVMRSWVDKF DRVKRKSRLS RTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-102	FAR1 family protein