PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027118337.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 438aa MW: 48085.3 Da PI: 4.8224 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl XP_027118337.1 14 RGRWTAEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.7 | 2.6e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+el++++++ lG++ W++Ia +m+ gRt++++k++w+++l XP_027118337.1 67 RGNITAEEEELIINLHASLGNR-WSLIAGHMP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence |
MGRAPCCEKV GIKRGRWTAE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGNI TAEEEELIIN LHASLGNRWS LIAGHMPGRT DNEIKNYWNS HLSRQLHKFK 120 KPDSESSVPP GPLQPAAEVM DLVVEHGGGE VSKKRKGSRT NGSNVRKNRR STNPSQPKEL 180 AGPAAATVQM PRTPTLEEEN LSSAVSLEEG GTSKFVVSSS LMTDACPKRE RRQNLASTGT 240 TSDECTPEVG ETKSSVMLQP EGGLMTSGSD GAVGLDSGML CLDEMMNIGD PDGILTFHGN 300 TSTKETCSET AATNVERRCD NMDPGCYTTR ASSIVDDQEE TDKLGKMDVS KGRNQIGCTS 360 PAHEDHHDGK LDDWDDWQWD EPVVQNNLTT LPGEEADLLS WLWDSDNNNN YLNSSGNFDD 420 GAGMDDEKHN AMVAWLLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 6e-76 | MYB family protein |