PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027118253.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 285aa    MW: 32064.1 Da    PI: 8.752
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027118253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.61.1e-1441251100
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy....kvePwdLpk..............kvkaeekewyfFskrdkkya.tgkrknr 76 
                     lp G+rF Ptdeel+++yLk+kv++++l+ +++  e diy    ++ Pw L                kv  ++k +y F+k  +  + ++k+k+r
  XP_027118253.1   4 LPFGVRFCPTDEELITHYLKNKVTEQPLPSDKFTIERDIYgeneTATPWILFGedapwqtpvvdafgKVFVHQKVLYVFTKLLNVGKsSDKNKKR 98 
                     689************************9998876677877322235799995246788888888777555588899***9987776515778888 PP

             NAM  77 atksgyWkatgkdkevlsk...kgelv 100
                     ++  g W++    ++++++   + +l+
  XP_027118253.1  99 IAGCGNWHNNSAPEPIMKNwgwGYQLI 125
                     999*************99755544445 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MDNLPFGVRF CPTDEELITH YLKNKVTEQP LPSDKFTIER DIYGENETAT PWILFGEDAP  60
WQTPVVDAFG KVFVHQKVLY VFTKLLNVGK SSDKNKKRIA GCGNWHNNSA PEPIMKNWGW  120
GYQLIGNKGR SPIDPRRRLS AIGRCTSMSL VVQIKRDDSK SSKGGRLLSW KNSRFAMVQF  180
NEDDEVIVEP VMGNSVPKAT LGKRKSVSGE GKQPEETENF RRGYIQYRGD GIESSGLKLV  240
QEESSTSVNN YSNPFDLKNV KQGNSNGDSS STMDDLFQFQ PVNLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.12e-08NAC family protein