PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027117484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 559aa MW: 63312.8 Da PI: 6.2471 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.2 | 1.8e-20 | 70 | 161 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA +GFsvrk k+++ + ++++ + ++Cskeg + +e++ +++ ++++ etrtgCka++ + +g+w+v k+++eHnHe+a XP_027117484.1 70 LYCDYAFAMGFSVRKGKQYYFEGTKRVRAKMYCCSKEGLAISEREGgnggSNSCNNNKLETRTGCKAMIYFVCN-KGEWKVGKFVKEHNHEMA 161 7**************************************999888888988899999*************9999.9***************96 PP | |||||||
2 | FAR1 | 65.4 | 1.5e-20 | 257 | 342 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA+ +GFsvrk k+++ +++i ++ ++Cskeg +e+ + + +++ rtgCka++ + ++ g+w+vtk+++eHnH++a XP_027117484.1 257 VYCDYAHVMGFSVRKGKQYYFPGTKRIRSKSYYCSKEGCVNEDISV---ATHNKLDARTGCKAMICFTCDEGGQWKVTKFVKEHNHKMA 342 7***************************************999877...89999********************************986 PP | |||||||
3 | FAR1 | 44 | 7.3e-14 | 412 | 500 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY eYA++vGF + + s s ++g+ + ++ C++ + +++ + + ++++ C+a+++vk +k+g+w+vt++ +H+H+l+ XP_027117484.1 412 FYGEYARDVGFVMDVMLSCPSVMEGSSIAHHSGCNEGDFCANKYNPLRLVVNQHPGLGARCQAMMTVKSDKSGNWVVTRFLRDHSHPLV 500 9*****************************************9999999999***********************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence |
MIDSRKRRRK SEDSNAVRVD SAEEEEEVKV VCFGCCGEEA INYKRKSYIE ALENLLSEKV 60 LNCEEEAYKL YCDYAFAMGF SVRKGKQYYF EGTKRVRAKM YCCSKEGLAI SEREGGNGGS 120 NSCNNNKLET RTGCKAMIYF VCNKGEWKVG KFVKEHNHEM AEVCERPLLR SARAALTSNY 180 GGMQPKLSDM SSPCCEVEKP EDVIDLDSDE EDVMCLRCNG AEGEAEACEC SSNTGVDDLE 240 KILVEQVVQN EEEAYKVYCD YAHVMGFSVR KGKQYYFPGT KRIRSKSYYC SKEGCVNEDI 300 SVATHNKLDA RTGCKAMICF TCDEGGQWKV TKFVKEHNHK MAEPYERHLL RSARSVSDAK 360 GSTASQSMKL AGLNNVTCSI ECSGSESIGH ENSIKEPHEG MMFETEDAAR AFYGEYARDV 420 GFVMDVMLSC PSVMEGSSIA HHSGCNEGDF CANKYNPLRL VVNQHPGLGA RCQAMMTVKS 480 DKSGNWVVTR FLRDHSHPLV IFPREVSYCM DDKDKKIQEL TSELRNKRRL CTMYQEQLML 540 FMREVEEHIN QLSRKTELM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 9 | RKRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 6e-50 | FAR1 family protein |