PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027117483.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 563aa MW: 63940.4 Da PI: 6.0326

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027117483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.2	1.8e-20	70	161	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA +GFsvrk k+++ + ++++ + ++Cskeg + +e++ +++ ++++ etrtgCka++ + +g+w+v k+++eHnHe+a XP_027117483.1 70 LYCDYAFAMGFSVRKGKQYYFEGTKRVRAKMYCCSKEGLAISEREGgnggSNSCNNNKLETRTGCKAMIYFVCN-KGEWKVGKFVKEHNHEMA 161 7************************************999888888988899999*********9999.9*************96 PP
2	FAR1	65.4	1.5e-20	257	342	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA+ +GFsvrk k+++ +++i ++ ++Cskeg +e+ + + +++ rtgCka++ + ++ g+w+vtk+++eHnH++a XP_027117483.1 257 VYCDYAHVMGFSVRKGKQYYFPGTKRIRSKSYYCSKEGCVNEDISV---ATHNKLDARTGCKAMICFTCDEGGQWKVTKFVKEHNHKMA 342 7*************************************999877...89999******************************986 PP
3	FAR1	44	7.4e-14	402	490	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY eYA++vGF + + s s ++g+ + ++ C++ + +++ + + ++++ C+a+++vk +k+g+w+vt++ +H+H+l+ XP_027117483.1 402 FYGEYARDVGFVMDVMLSCPSVMEGSSIAHHSGCNEGDFCANKYNPLRLVVNQHPGLGARCQAMMTVKSDKSGNWVVTRFLRDHSHPLV 490 9***************************************9999999999*********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MIDSRKRRRK SEDSNAVRVD SAEEEEEVKV VCFGCCGEEA INYKRKSYIE ALENLLSEKV 60 LNCEEEAYKL YCDYAFAMGF SVRKGKQYYF EGTKRVRAKM YCCSKEGLAI SEREGGNGGS 120 NSCNNNKLET RTGCKAMIYF VCNKGEWKVG KFVKEHNHEM AEVCERPLLR SARAALTSNY 180 GGMQPKLSDM SSPCCEVEKP EDVIDLDSDE EDVMCLRCNG AEGEAEACEC SSNTGVDDLE 240 KILVEQVVQN EEEAYKVYCD YAHVMGFSVR KGKQYYFPGT KRIRSKSYYC SKEGCVNEDI 300 SVATHNKLDA RTGCKAMICF TCDEGGQWKV TKFVKEHNHK MAEPYERHLL RSARSVSDAK 360 GSTASQSMKL ECSGSESIGH ENSIKEPHEG MMFETEDAAR AFYGEYARDV GFVMDVMLSC 420 PSVMEGSSIA HHSGCNEGDF CANKYNPLRL VVNQHPGLGA RCQAMMTVKS DKSGNWVVTR 480 FLRDHSHPLV IFPREVSYCM DDKDKKIQEL TSELRNKRRL CTMYQEQLML FMREVEEHIN 540 QLSRKTELSL QLSIEDCSYC LYI

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MIDSRKRRRK SEDSNAVRVD SAEEEEEVKV VCFGCCGEEA INYKRKSYIE ALENLLSEKV  60
LNCEEEAYKL YCDYAFAMGF SVRKGKQYYF EGTKRVRAKM YCCSKEGLAI SEREGGNGGS  120
NSCNNNKLET RTGCKAMIYF VCNKGEWKVG KFVKEHNHEM AEVCERPLLR SARAALTSNY  180
GGMQPKLSDM SSPCCEVEKP EDVIDLDSDE EDVMCLRCNG AEGEAEACEC SSNTGVDDLE  240
KILVEQVVQN EEEAYKVYCD YAHVMGFSVR KGKQYYFPGT KRIRSKSYYC SKEGCVNEDI  300
SVATHNKLDA RTGCKAMICF TCDEGGQWKV TKFVKEHNHK MAEPYERHLL RSARSVSDAK  360
GSTASQSMKL ECSGSESIGH ENSIKEPHEG MMFETEDAAR AFYGEYARDV GFVMDVMLSC  420
PSVMEGSSIA HHSGCNEGDF CANKYNPLRL VVNQHPGLGA RCQAMMTVKS DKSGNWVVTR  480
FLRDHSHPLV IFPREVSYCM DDKDKKIQEL TSELRNKRRL CTMYQEQLML FMREVEEHIN  540
QLSRKTELSL QLSIEDCSYC LYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	9	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-50	FAR1 family protein