PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027116989.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 576aa MW: 61704.9 Da PI: 6.332

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027116989.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	387	434	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_027116989.1 387 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 434 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MERENFQMPY GSGIGGFHNN ELNCSSSEVQ FQNCFFNPSW DNSLDQNDPF ESALSSMVSS 60 PAASNAAGGG GGGGVPGSSN GGENVVLREL IGRLGSICNS GEISPQSYLG GGNNSTNTSC 120 YSTPLNSPPK LNLSMMDHQI RGNLPIPGHH LPSHSSFAPF PTDPGFAERA ARFSCFANKS 180 LGGLNGQIGP LNDSELQNRL VQKLDSGKLS RVSSNQSIKV NSGSQLDVQD SKDGSLQDGI 240 SASDRKFSKL SRSSTPENTE FGDSRENSSV SEQITTGETG NNGQNDANSR KRKSIARGKA 300 KEPPSSSNSA KDANGASESN ESNAKRSKSG EENADEKDAT KAMADTNGTD KAAGDGNQKQ 360 NKENSKPPEA PKDYIHVRAR RGQATDAHSL AERVRREKIS ERMKLLQDLV PGCNKVTGKA 420 VMLDEIINYV QSLQRQVEFL SMKLATINPR MEFNAEALVS KDVLHSRGSL PHNMYSSEAS 480 AAGFPYPMQP QNGTNLPSAA IPNGQDVPFS MNHLNAAISR NQGIHLPPLD NFGEAASQIP 540 SFLEDDLHTV VQMGFGQNQT QNFHGIMPTA QMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MERENFQMPY GSGIGGFHNN ELNCSSSEVQ FQNCFFNPSW DNSLDQNDPF ESALSSMVSS  60
PAASNAAGGG GGGGVPGSSN GGENVVLREL IGRLGSICNS GEISPQSYLG GGNNSTNTSC  120
YSTPLNSPPK LNLSMMDHQI RGNLPIPGHH LPSHSSFAPF PTDPGFAERA ARFSCFANKS  180
LGGLNGQIGP LNDSELQNRL VQKLDSGKLS RVSSNQSIKV NSGSQLDVQD SKDGSLQDGI  240
SASDRKFSKL SRSSTPENTE FGDSRENSSV SEQITTGETG NNGQNDANSR KRKSIARGKA  300
KEPPSSSNSA KDANGASESN ESNAKRSKSG EENADEKDAT KAMADTNGTD KAAGDGNQKQ  360
NKENSKPPEA PKDYIHVRAR RGQATDAHSL AERVRREKIS ERMKLLQDLV PGCNKVTGKA  420
VMLDEIINYV QSLQRQVEFL SMKLATINPR MEFNAEALVS KDVLHSRGSL PHNMYSSEAS  480
AAGFPYPMQP QNGTNLPSAA IPNGQDVPFS MNHLNAAISR NQGIHLPPLD NFGEAASQIP  540
SFLEDDLHTV VQMGFGQNQT QNFHGIMPTA QMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	294	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	2e-76	bHLH family protein