PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027116739.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 291aa    MW: 32205.7 Da    PI: 6.3934
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027116739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.4e-18208242135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C++ +Tp+WR gp g+ktLCnaCG++y++ +l
  XP_027116739.1 208 CLHCQADQTPQWRAGPMGPKTLCNACGVRYKSGRL 242
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MDALHNPDVA GAAAGCFMLD DEDDLLNFSL DDGEEEKENK NPSPFLKDPY SFSPSNTLIS  60
HQDDDLSRSP SFPEFEEELE WLSNKDAFPA VETCFDLLSE TPDFDGLNHQ SPVSVLENSS  120
SSSNSNGSNS SNGSAVMSCC ENLKVPSSFP VRPRSQRRRR KRRSGFGDLP SQEWQWWNHV  180
NIKSNRQELA LPPVPVKANT NATIGRRCLH CQADQTPQWR AGPMGPKTLC NACGVRYKSG  240
RLVPEYRPAS SPTFSAALHS NSHRKIVEMR RQKQPGMGGI MANGSCGYRV G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163RRRRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.18e-41GATA family protein