PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027116218.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YC

Protein Properties

Length: 227aa MW: 25637.1 Da PI: 6.1499

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027116218.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.4	6.8e-56	50	153	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdfl XP_027116218.1 50 QLQNFWANQyqeIEQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFL 144 89****9999******************************************************************************* PP NF-YC 93 vdivprdel 101 vdivpr++l XP_027116218.1 145 VDIVPREDL 153 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MDQQGNGQLP AGPVQAPQTA GLPASSTQMA QHQLAYQHIH QQQQQQLQQQ LQNFWANQYQ 60 EIEQVTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA RACEMFILEL TLRAWNHTEE 120 NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKEEMLAS IPRGPLPVGG PAEGVPYYYM 180 SAQSAPPVGA PGMYMGKPVD QALYGHQPRP YMPQQMWPHQ QQPPADS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	129	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	3e-81	NF-YC family protein