PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027115935.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 389aa MW: 42671.1 Da PI: 4.6749 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrW +eEde+l++++kq G g+W++ ++ g+ R++k+c++rw +yl XP_027115935.1 14 RGRWAAEEDEKLINYIKQNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 8e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e ++++++ G++ W++Ia++++ gRt++++k++w+++l XP_027115935.1 67 RGNFTREEEETIINLHRSVGNK-WSLIASKLP-GRTDNEVKNYWNSHL 112 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence |
MGRAPCCEKV GLRRGRWAAE EDEKLINYIK QNGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNF TREEEETIIN LHRSVGNKWS LIASKLPGRT DNEVKNYWNS HLSRKIYSFR 120 SSDGSSVTTL DMVNMPSKSK RKGGRVSRAV AKKYSMHPIT KAPITTATNE TSSSSKISST 180 SGVQEATTAA QNAQVGMVEA TTHGVPESAA AAEKVSDDAA VGAVEESGKH QLQPMANNNY 240 DYDESEGGCI NSMHDIRCDG GEGCARALLV PSPEKLEGEK GVAGPNDELD DVTLLLESVL 300 ESELMDLSEI SVRTGDTENE SIMYPESASI NKDSDSGASY SNSDTGDGLY DCFPPLDSYF 360 NHTWDAEYAV PGFGLWDQED DDVLWPWES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 3e-70 | MYB family protein |