PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115632.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 230aa MW: 25016.3 Da PI: 8.2247

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.2	5.1e-42	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vh++FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqq++++l+ael+ XP_027115632.1 46 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHRVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQEVQSLQAELN 140 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_027115632.1 141 AVRAE 145 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MSRESRERLE EIGKKIKRES DVFSSQLGRR HMLGGDGGGT LNTITPCAAC KLLRRRCAQE 60 CPFSPYFSPH EPQKFASVHR VFGASNVSKM LMEVPESQRA DAANSLVYEA NVRLRDPVYG 120 CMGAISTLQQ EVQSLQAELN AVRAEILQYR FRETSNINIH VPSNSNLALL SSGAVSIAAL 180 PPTPPPPPPH LPPPPPSLPH TSPSSSMYSP PSSTAADFST ISNENISFFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-78	LBD family protein